Pairwise Alignments

Query, 519 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 654 a.a., ATPase AAA from Pseudomonas simiae WCS417

 Score =  224 bits (570), Expect = 1e-62
 Identities = 157/446 (35%), Positives = 234/446 (52%), Gaps = 35/446 (7%)

Query: 83  ELNALLGALDFPVLSIDMGGSIVAANRAAAQLLGVRVDEV--PGMPLARYVEDFDLPELV 140
           E   +L  L+  ++ +D  G I A NR A QL GV ++ +  P   L R      + E V
Sbjct: 223 EQQTVLEVLNEGLVVLDERGCIKALNRYARQLFGVGLELIGRPFQQLGRSELSDSMGEAV 282

Query: 141 RA--------NKSRINGLRIKVKGDVFLADIAPLQSEHDDSEALAGAVLTLHRADRIGER 192
           R         N+S++            L  + PL+          G +++L    RI E 
Sbjct: 283 RDRDCTFHLHNRSQL----------ACLVSVCPLEQ--------GGVIVSLRENRRIREI 324

Query: 193 IYNV-RKQELRGFDSIFQSSRVMAAVVREARRMAPLDAPLLIEGETGTGKELLARACHLA 251
              +   Q    FD+I  SSR +   +   R  +  D+  LI GE+GTGKEL A+A H  
Sbjct: 325 TRRIIGTQASYTFDTIQGSSRAIQDALHLGRIASRSDSTTLILGESGTGKELFAQAIHNG 384

Query: 252 SPRGQSPLMALNCAGLPESMAETELFGYGPGAFEGARAEGKLGLLELTAGGTLFLDGVGE 311
           S R   P +A+NC  +P  + ++ELFG+  GAF G+   G  G  EL  GGT+FLD +G+
Sbjct: 385 SDRCNGPFVAVNCGAIPRDLVQSELFGHVEGAFTGSARGGSAGKFELADGGTIFLDEIGD 444

Query: 312 MSPRLQVKLLRFLQDGCFRRVGSDEEVYLDVRVICATQVDLSELCARGEFRQDLYHRLNV 371
           MS   QV LLR LQ+G   RVG+     +DVR+I AT  +LS+  A+G FR+DLY+RLNV
Sbjct: 445 MSFDAQVSLLRVLQEGEITRVGAKNSRQVDVRIIAATHRNLSQAVAQGAFREDLYYRLNV 504

Query: 372 LSLHIPPLRECMDGLEGLVQHFLDQASRQIGCAMPRLAPAAMDKLGQYHWPGNVRQLENV 431
           L+L +PPLR   + +  L +HFL + +R +  ++   +P AM  L  Y WPGNVR+LEN 
Sbjct: 505 LNLTVPPLRMRREDIPLLARHFLARCARSLRKSVQGFSPEAMALLSAYGWPGNVRELENS 564

Query: 432 LFQAVSLCDGGVVKSEHIRLP-DYGVRQPLGEFSLEGDLSQIVGRFEK-AVLESLMGEFP 489
           + +A +L  G ++  E + LP +   R PL  +  E   +Q +   E+ A++ +L     
Sbjct: 565 IERATNLAMGALI--EPVDLPLENRQRAPLRAY--EPQAAQDLSSHERHAIVAALTNTGG 620

Query: 490 SSRALGKRLGVSHTTIANKLRDYSLN 515
           + R   ++L VS   + NK+  + LN
Sbjct: 621 NIRLAARQLNVSRGGLYNKMSRFGLN 646