Pairwise Alignments

Query, 519 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 462 a.a., sigma 54-interacting transcriptional regulator from Variovorax sp. OAS795

 Score =  207 bits (526), Expect = 9e-58
 Identities = 118/279 (42%), Positives = 164/279 (58%), Gaps = 7/279 (2%)

Query: 207 IFQSSRVMAAVVREARRMAPLDAPLLIEGETGTGKELLARACHLASPRGQSPLMALNCAG 266
           I   S  M+ ++ EAR +A  DA +L+ G++G GKELLARA H AS R   P +A+NC  
Sbjct: 142 IVSRSNRMSELLAEARMVAKSDASVLLRGDSGAGKELLARAIHKASARADKPFVAVNCGA 201

Query: 267 LPESMAETELFGYGPGAFEGARAEGKLGLLELTAGGTLFLDGVGEMSPRLQVKLLRFLQD 326
           +PE++ E+ELFG+  GAF  A A  K GL +   GGTL LD +G+M P LQVKLLR LQ+
Sbjct: 202 IPEALLESELFGHMKGAFTDAHANHK-GLFQQADGGTLLLDEIGDMPPALQVKLLRVLQE 260

Query: 327 GCFRRVGSDEEVYLDVRVICATQVDLSELCARGEFRQDLYHRLNVLSLHIPPLRECMDGL 386
              R +G+ + + +DVR+I AT  DL    A G+FR+DLY+RLNV++L +PPL    + +
Sbjct: 261 RAVRPLGASQSIEVDVRIISATHRDLDAAMAAGQFREDLYYRLNVVTLTLPPLSARREDI 320

Query: 387 EGLVQHFLDQASRQIGCAMPRLAPAAMDKLGQYHWPGNVRQLENVLFQAVSLCDGGVVKS 446
             L  HFL + S + G  +   AP A+  L    WPGNVRQL NV+ Q  +L    ++  
Sbjct: 321 PLLANHFLQKLSTKYGKRLSGFAPEALKALATAAWPGNVRQLYNVVEQVCALSSSPLIP- 379

Query: 447 EHIRLPDYGVRQPLGEFSLEGDLSQIVGRFEKAVLESLM 485
             + L    +R P  E     +  Q   RFE+  L  L+
Sbjct: 380 --LALVQRALRVPTVEVQTYAEAKQ---RFERDYLVGLL 413