Pairwise Alignments

Query, 519 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 650 a.a., Sigma-54 dependent sensory box protein from Pseudomonas putida KT2440

 Score =  229 bits (583), Expect = 3e-64
 Identities = 165/487 (33%), Positives = 250/487 (51%), Gaps = 38/487 (7%)

Query: 48  LINLQFQALRPKFEAIAGVFGVKRVGLMPSERRHMELNALLGALDFPVLSIDMGGSIVAA 107
           +++L     R   E   G+   +RV +  ++RRH  LNA+L  +   V ++D  G + + 
Sbjct: 175 VLSLSEDTARKALEEALGILDTQRVEI--AKRRH--LNAVLRHIPAGVAAVDNQGVVQSL 230

Query: 108 NRAAAQLLGVRVDEVPGMPLARYVEDFDLPELVRANKSRINGLRIKVKGDVFLADIAPLQ 167
           N A AQLL + V    G PL +   + DL + ++      N + +++     ++++ P+ 
Sbjct: 231 NPALAQLLDLPVSAALGRPLQQLCPELDLQQALQEGTGEENRV-MRLGSHAVVSNLLPIL 289

Query: 168 SEHDDSEALAGAVLTLHRADRIGERIYNVRKQEL----RGFDSIFQSSRVMAAVVREARR 223
            E+ +   L      +    R  +RI + R+          D +  +S+    +++ A+R
Sbjct: 290 -ENGERTGLVLTCQDITVVQRADQRIRSTRRPGAFTARYRLDQLNGNSKANREMLQLAKR 348

Query: 224 MAPLDAPLLIEGETGTGKELLARACHLASPRGQSPLMALNCAGLPESMAETELFGYGPGA 283
            A   + +LI GE+GTGKELLA+  H  SPR Q P +A+NCA  PES+ E+ELFGY  GA
Sbjct: 349 FATSHSTILITGESGTGKELLAQGIHNESPRRQGPFVAINCAAFPESLLESELFGYEEGA 408

Query: 284 FEGARAEGKLGLLELTAGGTLFLDGVGEMSPRLQVKLLRFLQDGCFRRVGSDEEVYLDVR 343
           F G+R  GK GL E    GTLFLD +G+M   LQ +LLR LQ+    R+GS E + +DVR
Sbjct: 409 FSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVSLQTRLLRVLQEREVLRLGSTEPIAIDVR 468

Query: 344 VICATQVDLSELCARGEFRQDLYHRLNVLSLHIPPLRECMDGL----EGLVQHFLDQASR 399
           +I AT  DL      G+FR DLY RLN+L L   PLRE  + +     G+ Q  L Q   
Sbjct: 469 IIAATHKDLRSAMDDGDFRTDLYFRLNILRLQTTPLRERPEDIALICRGISQRLLVQGQP 528

Query: 400 QIGCAMPRLAPAAMDKLGQYHWPGNVRQLENVLFQAV----SLCDGGVVKSEHIRL---- 451
                +P    A +  L +Y WPGNVR+LENV+ +A+     L +   V  +++      
Sbjct: 529 PGAADIP---AALLPYLERYAWPGNVRELENVIERAMLSARELLEEHRVNEQYLARVLPE 585

Query: 452 ------PDYGVRQPLGEFSLE--GDLSQIVGRFEKAVLESLMGEFPSSRALGKRLGVSHT 503
                 P    ++  GE  L   G ++Q+  R  K  LES  G    +    +RLG+S T
Sbjct: 586 LCEGPPPSPARKKSSGETDLHTIGKVAQL--RHVKETLESCRGNLDEA---ARRLGISRT 640

Query: 504 TIANKLR 510
           T+  +LR
Sbjct: 641 TLWRRLR 647