Pairwise Alignments

Query, 519 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 502 a.a., Sigma-54 dependent transcriptional regulator/sensory box protein from Pseudomonas putida KT2440

 Score =  375 bits (964), Expect = e-108
 Identities = 216/514 (42%), Positives = 300/514 (58%), Gaps = 16/514 (3%)

Query: 1   MRIKVHCQNRIGILRDILNLLVEYGINVLRGEVGGDHGNAIYLHCPNLINLQFQALRPKF 60
           MRI V   +R+GI +++L LL    +N+   E+   +   +Y+  P L     + L    
Sbjct: 1   MRIHVSFIDRVGITQEVLALLGARNLNLDAVEMVPPN---VYIDAPTLSPAVLEELHDAL 57

Query: 61  EAIAGVFGVKRVGLMPSERRHMELNALLGALDFPVLSIDMGGSIVAANRAAAQLLGVRVD 120
             + GV  V  V ++P +RRH++L+ALL A+  PVL++D  G ++ AN A  +L G    
Sbjct: 58  FEVHGVQSVDVVDILPGQRRHLQLDALLAAMSDPVLAVDSAGLVLLANPALIELCG---R 114

Query: 121 EVPGMPLARYVEDFDLPELVRANKSRINGLRIKVKGDVFLADIAPLQSEHDDSEALAGAV 180
           E  G  +     D  L + +  N   +    +++ G   L D  P+ +        AG +
Sbjct: 115 ESAGRSVGELFGDPALLQALLDNNFHLPMREMQLNGHSLLLDAMPITN--------AGGL 166

Query: 181 LTLHRADRIGERIYNVRKQELRGFDSIFQSSRVMAAVVREARRMAPLDAPLLIEGETGTG 240
           LTL+   R+GER+  +      GFD++   S  +  +   A R+A LDAPLL+ GETGTG
Sbjct: 167 LTLYPPSRMGERLSALHHDHAEGFDALLGESPAIRTLKARALRVAALDAPLLVHGETGTG 226

Query: 241 KELLARACHLASPRGQSPLMALNCAGLPESMAETELFGYGPGAFEGARAEGKLGLLELTA 300
           KEL+ARACH  S R  +P +ALNCA LPES+AE+ELFGY PGAF GA+  GK GL+EL  
Sbjct: 227 KELVARACHAVSSRHAAPFLALNCAALPESLAESELFGYAPGAFTGAQRGGKPGLMELAN 286

Query: 301 GGTLFLDGVGEMSPRLQVKLLRFLQDGCFRRVGSDEEVYLDVRVICATQVDLSELCARGE 360
            GT+FLD +GEMSP LQ KLLRFL DG FRRVG D EV +DVR+I AT  DL  + A G 
Sbjct: 287 QGTVFLDEIGEMSPYLQAKLLRFLSDGSFRRVGGDREVKVDVRIISATHRDLERMVAEGS 346

Query: 361 FRQDLYHRLNVLSLHIPPLRECMDGLEGLVQHFLDQASRQIGCAMPRLAPAAMDKLGQYH 420
           FR+DL++RLNVL+L +PPLR+    +  L   F+ QA  QI     RL P+    L    
Sbjct: 347 FREDLFYRLNVLNLEVPPLRDRGQDILMLAHFFMQQACTQIQRPACRLTPSTHSALLANP 406

Query: 421 WPGNVRQLENVLFQAVSLCDGGVVKSEHIRLPDYGVRQPLGEFSLEGDLSQIVGRFEKAV 480
           WPGNVRQL+NV+F+A ++C+G +V    + +    V +  G+      L Q VG FE+ +
Sbjct: 407 WPGNVRQLQNVIFRAAAICEGNLVDIGDLDIAGTSVAR--GQDGEVASLEQAVGDFEREL 464

Query: 481 LESLMGEFPSSRALGKRLGVSHTTIANKLRDYSL 514
           L+ L   +PS+R L  RL  SHT IA +LR Y +
Sbjct: 465 LQRLYASYPSTRQLAGRLQTSHTAIAQRLRKYGI 498