Pairwise Alignments

Query, 519 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 430 a.a., putative sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score =  212 bits (539), Expect = 2e-59
 Identities = 156/447 (34%), Positives = 224/447 (50%), Gaps = 33/447 (7%)

Query: 81  HMELNALLGALD---FPVLSIDMGGSIVAANRAAAQLLGVRVDEVP-GMPLARYVEDFDL 136
           H  + AL+  L+    P + +D   +I+AAN A  +  G R D+ P G    R    + +
Sbjct: 5   HPLILALVSYLEHDALPTIVLDTDYNILAANAAYRRQFG-RHDQAPLGEKCHRVSHHYAV 63

Query: 137 P-ELVRANKSRINGLRIKVKGDVFLADIAPLQSEHDDSEAL------AGAVLTLHRADRI 189
           P +    +         KV   V      P   EH D E           V  + R   I
Sbjct: 64  PCDQAGEHCPMRKAWDSKVPERVLHIHHTPRGPEHVDVELRPILDEQGKVVAFVERLTTI 123

Query: 190 GERIYNVRKQELRGFDSIFQSSRVMAAVVREARRMAPLDAPLLIEGETGTGKELLARACH 249
                  ++Q L G    F+      A +   +R AP   P+L++GE+GTGKEL ARA H
Sbjct: 124 TLASAQPQEQGLVGRAPTFK------AALASLQRAAPAQIPVLLQGESGTGKELFARAVH 177

Query: 250 LASPRGQSPLMALNCAGLPESMAETELFGYGPGAFEGARAEGKLGLLELTAGGTLFLDGV 309
           + SPR   PL+ ++C GL ES+ E+ELFGY  GAF GA  + K+GL E   GGTLFLD +
Sbjct: 178 MGSPRANGPLVVVDCTGLTESLFESELFGYEKGAFTGAN-QRKIGLAEAAHGGTLFLDEI 236

Query: 310 GEMSPRLQVKLLRFLQDGCFRRVGSDEEVYLDVRVICATQVDLSELCARGEFRQDLYHRL 369
           GE+   +QVKLLR ++ G FR VGS   V+ D R+I AT   L ++ A G FR+DLY+R+
Sbjct: 237 GEVPLAMQVKLLRLIESGSFRPVGSLRTVHSDFRLISATHKPLKQMVADGSFREDLYYRI 296

Query: 370 NVLSLHIPPLRECMDGLEGLVQHFLDQASRQIGCAMPRLAPAAMDKLGQYHWPGNVRQLE 429
           +   + +P LRE +  L  L Q  L    R  G   PRL+  A+ +L  + +PGN+R+L 
Sbjct: 297 SGFPIRLPALRERVKDLPLLAQSLL---QRMAGQPTPRLSEDALQQLALHPFPGNIRELR 353

Query: 430 NVLFQAVSLCDGGVVKSEHIRLPDYGVRQPLGEFSLEGDLSQIVGRFEKAVLESLMGEFP 489
           N+L +A    D GV++ EH+   D G+           DL ++    E         +F 
Sbjct: 354 NILERARLFADDGVIRPEHLP-EDTGLTGAAKGSGRRNDLGELAQALE---------QFK 403

Query: 490 SSRA-LGKRLGVSHTTIANKLRDYSLN 515
            SR+ L   LG+S  T+  +L+   LN
Sbjct: 404 GSRSELASHLGMSERTLYRRLKALGLN 430