Pairwise Alignments

Query, 519 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 513 a.a., Transcriptional repressor protein TyrR from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  414 bits (1064), Expect = e-120
 Identities = 226/518 (43%), Positives = 323/518 (62%), Gaps = 12/518 (2%)

Query: 1   MRIKVHCQNRIGILRDILNLLVEYGINVLRGEVGGDHGNAIYLHCPNLINLQFQALRPKF 60
           MR++V C++R+G+ R++L+LLV   I++   E+  D    IYL+   L    F +L  + 
Sbjct: 1   MRLEVFCEDRLGLTRELLDLLVLRSIDLRGIEI--DPIGRIYLNFAELEFTDFSSLMAEI 58

Query: 61  EAIAGVFGVKRVGLMPSERRHMELNALLGALDFPVLSIDMGGSIVAANRAAAQLLGVRVD 120
             I+GV  V+ V  MPSER H+ L+ALL AL  PVLS+DM   +  AN A+ QL     +
Sbjct: 59  RRISGVTDVRTVPWMPSEREHLALSALLEALPEPVLSLDMKSKVEMANPASCQLFAQSQE 118

Query: 121 EVPGMPLARYVEDFDLPELVRANKSRINGLRIKVKGDVFLADIAPLQSEHDDSE-ALAGA 179
            +     A+ +  F+    +  N    +   + + G  FL +I P+  ++++ E  L GA
Sbjct: 119 RMRHHTAAQLINGFNFQRWLDGNPQSSHNEHVVINGQNFLMEITPVHLQNENDEYVLTGA 178

Query: 180 VLTLHRADRIGERIYNVRKQELRGFDSIFQSSRVMAAVVREARRMAPLDAPLLIEGETGT 239
           V+ L    R+G+++ N+  Q+L  F  I   S  M  VV +AR++A L APLLI G+TGT
Sbjct: 179 VVMLRSTIRMGQQLQNLSTQDLSAFSQIIAVSAKMKHVVEQARKLAMLSAPLLITGDTGT 238

Query: 240 GKELLARACHLASPRGQSPLMALNCAGLPESMAETELFGYGPGAFEGARAEGKLGLLELT 299
           GK+L A ACH ASPR   P +ALNCA +PE   E+ELFG+ P        EGK G  E  
Sbjct: 239 GKDLFAYACHQASPRSAKPYLALNCASIPEDAVESELFGHAP--------EGKKGFFEQA 290

Query: 300 AGGTLFLDGVGEMSPRLQVKLLRFLQDGCFRRVGSDEEVYLDVRVICATQVDLSELCARG 359
            GG++ LD +GEMSPR+Q KLLRFL DG FRRVG D E+++DVRVICATQ +L EL  +G
Sbjct: 291 NGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEIHVDVRVICATQKNLVELVQKG 350

Query: 360 EFRQDLYHRLNVLSLHIPPLRECMDGLEGLVQHFLDQASRQIGCAMPRLAPAAMDKLGQY 419
            FR+DLY+RLNVL+L++PPLR+C   +  L + F+ + + + G   P+L+      L +Y
Sbjct: 351 LFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLSADLSTVLTRY 410

Query: 420 HWPGNVRQLENVLFQAVSLCDGGVVKSEHIRLPDY-GVRQPLGEFSLEGDLSQIVGRFEK 478
            WPGNVRQL+N +++A++  +G  ++ + I LPDY      +GE ++EG L  I  RFE+
Sbjct: 411 GWPGNVRQLKNAIYRALTQLEGYELRPQDILLPDYDAATVAVGEDAMEGSLDDITSRFER 470

Query: 479 AVLESLMGEFPSSRALGKRLGVSHTTIANKLRDYSLNK 516
           +VL  L   +PS+R L KRLGVSHT IANKLR+Y L++
Sbjct: 471 SVLTQLYRSYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508