Pairwise Alignments

Query, 519 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 461 a.a., fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein from Escherichia coli BL21

 Score =  209 bits (531), Expect = 2e-58
 Identities = 122/317 (38%), Positives = 184/317 (58%), Gaps = 12/317 (3%)

Query: 207 IFQSSRVMAAVVREARRMAPLDAPLLIEGETGTGKELLARACHLASPRGQSPLMALNCAG 266
           I  +S  M  + ++  ++A   A +LI GE+GTGKEL+ARA H  S R + P + +NCA 
Sbjct: 145 ILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAA 204

Query: 267 LPESMAETELFGYGPGAFEGARAEGKLGLLELTAGGTLFLDGVGEMSPRLQVKLLRFLQD 326
           LPES+ E+ELFG+  GAF GA+   + GL E    GTL LD +GEM   LQ KLLR LQ+
Sbjct: 205 LPESLLESELFGHEKGAFTGAQTL-RQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQE 263

Query: 327 GCFRRVGSDEEVYLDVRVICATQVDLSELCARGEFRQDLYHRLNVLSLHIPPLRECMDGL 386
             F R+G  + + +D+R+I AT  DL  +   G FR+DL++RLNV+ L +PPLR+  + +
Sbjct: 264 REFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDI 323

Query: 387 EGLVQHFLDQASRQIGCAMPRLAPAAMDKLGQYHWPGNVRQLENVLFQAVSLCDGGVVKS 446
             L  HFL + S +    +  + P AM  L  + WPGN+R+L NV+ +AV +  G ++ S
Sbjct: 324 SLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSGPIIFS 383

Query: 447 E----HIRLPDYGVRQ----PLGEFSLEGDLSQIVGRFEKAVLESLMGEFPSSRALGKRL 498
           E     IR P     +    P+GE +L+ ++ ++  R    VLE   G    +  +   L
Sbjct: 384 EDLPPQIRQPVCNAGEVKTAPVGERNLKEEIKRVEKRIIMEVLEQQEGNRTRTALM---L 440

Query: 499 GVSHTTIANKLRDYSLN 515
           G+S   +  KL++Y ++
Sbjct: 441 GISRRALMYKLQEYGID 457