Pairwise Alignments

Query, 261 a.a., lysine / arginine / ornithine ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 250 a.a., L-lysine and D-lysine ABC transporter, substrate-binding component (from data) from Pseudomonas putida KT2440

 Score =  184 bits (468), Expect = 1e-51
 Identities = 108/257 (42%), Positives = 146/257 (56%), Gaps = 12/257 (4%)

Query: 2   KKLALLGALALSVFSLVSQAAEKPLKIGIEAAYPPFAFKQPDGSIAGFDYDIGNALCEEM 61
           K +ALLGA AL    L   A+ + L+   E AYPPF +   D  + GFD DI +ALCE+M
Sbjct: 3   KSMALLGACALL---LAGAASAETLRFATEGAYPPFNYVDADNKLHGFDVDITHALCEQM 59

Query: 62  KTKCTWVEQEFDGLIPALKVRKIDAILSSMSITDDRKKSVDFTKRYYLTPARLVMKDGTT 121
           K +CT V Q+++G+IPAL  RK DAI++SM  T++R+K + FT  YY TP  + +   + 
Sbjct: 60  KVECTLVAQDWEGIIPALMARKYDAIVASMIDTEERRKKIAFTDHYYRTPLTVAVAKDSK 119

Query: 122 VSDSLDELKGKKIGVQRGSIHDRFAKEVLGAKGATVVPYGTQNEIYLDVAAGRLDGTVAD 181
           +  +  +  G  +G Q  S    +A++V G  GA V  Y T +E   D+AAGRLDG +AD
Sbjct: 120 IDSAQTDFVGYTVGAQSSSTQAIYAEDVYGKAGADVKLYPTMDEANADLAAGRLDGVIAD 179

Query: 182 ATLLEDGFLKT--DAGKGFAFVGPAFTDAKYFGDGIGIAVRKGDKANVDRINAAIDAIRA 239
              L +   K   D  K    V     DA        IAVRK D+A   R+N A+  I A
Sbjct: 180 KFPLHEWMNKNGGDCCKILGDVADTKADA-------AIAVRKDDEALRQRLNTALQQIVA 232

Query: 240 NGKYKEIESKYFNFDIY 256
           NG Y++I SKYF FDIY
Sbjct: 233 NGTYQKIASKYFAFDIY 249