Pairwise Alignments

Query, 261 a.a., lysine / arginine / ornithine ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 257 a.a., ABC transporter, substrate binding protein (amino acid) from Agrobacterium fabrum C58

 Score =  223 bits (568), Expect = 3e-63
 Identities = 118/254 (46%), Positives = 168/254 (66%), Gaps = 6/254 (2%)

Query: 6   LLGALALSVFSLVSQAA--EKPLKIGIEAAYPPFAFKQPDGSIAGFDYDIGNALCEEMKT 63
           LL A++++  SL+S AA  +  + IG E AYPPF   + DG++ GFD DI  ALCE+MK 
Sbjct: 7   LLAAVSIAAISLLSGAALAQDKIVIGTEGAYPPFNNLEADGTLTGFDIDIAKALCEQMKA 66

Query: 64  KCTWVEQEFDGLIPALKVRKIDAILSSMSITDDRKKSVDFTKRYYLTPARLVMKDGTTVS 123
           +CT+V  ++DG+IPAL+ +K DAI++SMSIT +R + VDF+K+YY TP  + +   + + 
Sbjct: 67  ECTFVTNDWDGIIPALQAKKFDAIIASMSITPERLQKVDFSKKYYNTPPAIAVPKDSPIK 126

Query: 124 DSLDELKGKKIGVQRGSIHDRFAKEVLGAKGATVVPYGTQNEIYLDVAAGRLDGTVADAT 183
            S+D+LKGK +G Q  + H  +A++      A V  Y T +E  LD+A GR+D  + D  
Sbjct: 127 -SIDDLKGKSLGAQGSTTHSNYAEKHF--PDADVKMYPTADEYKLDIANGRIDAVIDDIV 183

Query: 184 LLEDGFLKTDAGKGFAFVGPAFTDAKYFGDGIGIAVRKGDKANVDRINAAIDAIRANGKY 243
           +L + +LKTDAGK    + P   D +  G+G GIAVRKGD A  D+  AAI  IRA+GKY
Sbjct: 184 VLSE-WLKTDAGKCCKILTPLKVDPEINGNGAGIAVRKGDTALADKFTAAIAGIRASGKY 242

Query: 244 KEIESKYFNFDIYG 257
           +EI  KYF+FD+YG
Sbjct: 243 QEINKKYFDFDVYG 256