Pairwise Alignments

Query, 232 a.a., histidine / lysine / arginine / ornithine ABC transporter - permease subunit from Pseudomonas putida KT2440

Subject, 222 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  119 bits (297), Expect = 6e-32
 Identities = 65/223 (29%), Positives = 122/223 (54%), Gaps = 10/223 (4%)

Query: 1   MIFDYNVVWEALPMYFGGLLTTLKLLAISLFFGLLAAIPLGLMRVS-RQPVVNLAAWLYT 59
           M  D++ VW+  P    G L T+++ A +L  G +  + +G+ R++ ++  +  A   Y 
Sbjct: 1   MDLDFSPVWQGWPDLLRGALVTVEITACALALGCVLGLLVGIGRLNPKRRWIYGACTAYV 60

Query: 60  YVIRGTPMLVQLFLIYYGLAQFEAVRESIFWPLLSSATFCACLAFGINTSAYTAEIIAGS 119
             IRGTP+LVQLF++++GL  F          +L  A  C  L  G+ + AY +EI+ G+
Sbjct: 61  AAIRGTPLLVQLFILFFGLPHFG---------ILLPAFLCGVLGLGVYSGAYVSEIVRGA 111

Query: 120 LKATPHGEIEAAKAMGMSRMKMYRRILLPSALRRALPQYSNEVIMMLQTTSLASIVTLID 179
           +++   G+  AA+++GM+     R+I+LP A+ R +P   NE I +++ ++L S++T+ D
Sbjct: 112 IQSIDKGQTMAAQSLGMTPGVAMRQIVLPQAVVRMIPPLGNEFIALIKNSALVSLLTIHD 171

Query: 180 ITGAARTVNAQYYLPFEAYITAGVFYLCLTFILVRLFKMAERR 222
           +    + + +  Y   E Y+   V Y  LT  +  + +  E++
Sbjct: 172 VMHEGQKIISVSYRSLEVYLAIAVVYFVLTGTMTLILRHFEQK 214