Pairwise Alignments

Query, 232 a.a., histidine / lysine / arginine / ornithine ABC transporter - permease subunit from Pseudomonas putida KT2440

Subject, 249 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  119 bits (297), Expect = 7e-32
 Identities = 62/200 (31%), Positives = 113/200 (56%), Gaps = 9/200 (4%)

Query: 13  PMYFGGLLTTLKLLAISLFFGLLAAIPLGLMRVSRQPVVNLAAWLYTYVIRGTPMLVQLF 72
           P++  G   TLK+ A+++  G+     +   + S+  +++ A  +Y  ++R TP LVQ+F
Sbjct: 15  PVFINGAWLTLKMTALAVVIGVAVGTLVAFAKRSKIRLLSRACTIYIEIVRNTPFLVQIF 74

Query: 73  LIYYGLAQFEAVRESIFWPLLSSATFCACLAFGINTSAYTAEIIAGSLKATPHGEIEAAK 132
           L+Y+GLA F  VR   F          A LA  IN +AY AEII   L++ P G+IEAA+
Sbjct: 75  LLYFGLASF-GVRMPTF--------AAAVLAMVINIAAYAAEIIRAGLESVPRGQIEAAE 125

Query: 133 AMGMSRMKMYRRILLPSALRRALPQYSNEVIMMLQTTSLASIVTLIDITGAARTVNAQYY 192
            +G+S+ ++   ++L  ++ +  P  +++ ++M+Q +++AS ++  ++T  A TV +  +
Sbjct: 126 CLGLSKWRIGWHVMLQPSIEKVYPALTSQFLLMMQASAMASQISAEELTAIANTVQSDTF 185

Query: 193 LPFEAYITAGVFYLCLTFIL 212
              E YI     YL L+  +
Sbjct: 186 RSLETYIVVAALYLVLSLFI 205