Pairwise Alignments

Query, 326 a.a., Transcriptional regulator, AraC family from Pseudomonas putida KT2440

Subject, 367 a.a., AraC family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  225 bits (574), Expect = 1e-63
 Identities = 131/312 (41%), Positives = 182/312 (58%), Gaps = 12/312 (3%)

Query: 4   QRIGFLIWPSTRPLTLALAEEVLLVAQRVHPDVVYELVFLQAEPAQEGAWRLPGEPWTGR 63
           Q IGFL+  +   ++LA A E L +A ++    +Y    L  +  Q   W   G   T  
Sbjct: 16  QSIGFLLLDNFTLISLASAVEPLRMANQLSGRELYRWTTLSVDGNQ--VWASDGLQITPD 73

Query: 64  LEGCHKLFLLADEPPAAMGAAFSAA--------LKQLARSGCLIGGLSAGVYPLAMLGLL 115
               HK   L D      G              L+  AR    +G +  G + LA  GLL
Sbjct: 74  AS-MHKAPAL-DTVIVCGGVGIQRTVTREHVSWLQSQARQSRRLGAVCTGSWALACAGLL 131

Query: 116 DGYRAAVHWRWQDDFAERFPKVIATSHLFDWDRDRLTACGGMAVTDLLLAVLARDHGAEL 175
           DG+  +VHW       E FP+V  ++ LF  DR+R T+ GG A  D++L +++RDHG EL
Sbjct: 132 DGFDCSVHWECLASMQEAFPRVAMSTRLFTLDRNRFTSSGGTAPLDMMLHLISRDHGREL 191

Query: 176 AGAVSEELVVERIREGGERQRIPLQNRLGSSHPKLTQAVLLMEANIEEPLTTDEIAQHVC 235
           + A+SE  V ERIR   + QR+PL++ LG++ PKL + V LMEAN+EEP+  DE+A +V 
Sbjct: 192 SAAISEMFVYERIRNEQDHQRVPLKHMLGTNQPKLQEIVALMEANLEEPIDLDELAVYVA 251

Query: 236 VSRRQLERIFKQYLNRVPSQYYLELRLNKARQMLMQTSKSIIQIGLSCGFSSGPHFSSAY 295
           VSRRQLER+F++YL+  PS+YYL+LRL +ARQ+L QT  SII++   CGF S PHFS  Y
Sbjct: 252 VSRRQLERLFQKYLHCSPSRYYLKLRLIRARQLLKQTPMSIIEVASVCGFVSTPHFSKCY 311

Query: 296 RNFFGATPREDR 307
           R +FG  PR++R
Sbjct: 312 REYFGIPPRDER 323