Pairwise Alignments

Query, 450 a.a., putative Porin from Pseudomonas putida KT2440

Subject, 433 a.a., outer-membrane porin D from Pseudomonas putida KT2440

 Score =  205 bits (521), Expect = 3e-57
 Identities = 150/453 (33%), Positives = 220/453 (48%), Gaps = 52/453 (11%)

Query: 11  LAALACGTLAQQGYAVGFLDDSKASISSRTLYYDGDQR------STGGADQRQTLTGLRL 64
           L  L  G  AQ   A GFL+D+ A I +R +Y++ D R      S G + + +   G  L
Sbjct: 20  LFLLCAGVNAQ---AAGFLEDASAKIEARNVYFNRDFRDGYSSSSQGASKREEWAQGFIL 76

Query: 65  DFQSGYTEGVVGLGLDLQALAGFTLSGGTSPHNASTVNTVSPVTTDGSPVDNWSRIGGNA 124
           + QSGYT+G VG+G+D   + GF L   +SP ++++    S         D ++++G  A
Sbjct: 77  NVQSGYTQGPVGVGVDALGMFGFKLD--SSPADSNSGLLPSSGHDPRRSADQYAKMGLAA 134

Query: 125 RFKYSKTELKAGNALTFNLPVLISNDGRLLPASFQGAALTSNEFENLTLNGGFLNRAIGR 184
           + K S T LK G+ +  ++P+L  NDGRLLP  F GA LTS E  +L      L++   R
Sbjct: 135 KVKVSNTVLKYGSMMP-DVPLLKYNDGRLLPTLFHGAMLTSEELHDLKFTLARLDKYTAR 193

Query: 185 ASSNWAGISGGGAKG-------SDGFAFAGGDWNVRKNLKLQYYYANLEDYYSQNFLGLI 237
            S++   I              +D F  AG D+   +    QY  A LE+ Y Q+FLGL+
Sbjct: 194 DSTDRQDIRVHCKNKRYACDTEADHFDLAGVDYRFNERFSAQYQVAKLENIYRQHFLGLV 253

Query: 238 HSFDMGVGQSLTTDLRYFKSDSDGKNGTDSRYALRNGYNENGKIDNTTWSLAFTYKAGGH 297
            S  + VG SL+ D+R  KSD  G                 G+ID+  +S    Y  GGH
Sbjct: 254 ASQPLPVG-SLSADMRLIKSDDIGNARA-------------GEIDHRAFSGMLGYSLGGH 299

Query: 298 ALTLGHQQVSDKSGFATVNSSNVVDGRGRPEGEGGVQSLYLYTDVMVNSFTRAGENSTFG 357
            L+ G Q++   S    ++ SN                 YL     VN F  A E S   
Sbjct: 300 KLSAGWQRMYGNSAMPYLDGSNP----------------YLVNYAQVNDFAAAQERSWQV 343

Query: 358 LYSYDFAALGVPGLKAGWTYVSGKDIRGTGNTTTGRYNEWESDYRLDYVLQSGTFKGLGF 417
            Y YDF ALGVPGL     Y++G +I+  G++  G+  EWE D    Y +QSGTFK +  
Sbjct: 344 RYDYDFKALGVPGLTFFTRYINGDNIKVPGSSVEGK--EWERDTEFKYQVQSGTFKDVSV 401

Query: 418 TLRKGVFRTGLPDSTLKDQDQVRFFVNYTYALW 450
            LR   +R+   +   +D D+ R  V+Y ++++
Sbjct: 402 RLRNSTYRSNY-ERWARDMDETRVIVSYNFSIF 433