Pairwise Alignments

Query, 450 a.a., putative Porin from Pseudomonas putida KT2440

Subject, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

 Score =  194 bits (492), Expect = 6e-54
 Identities = 141/456 (30%), Positives = 213/456 (46%), Gaps = 48/456 (10%)

Query: 4   VTKVKRILAALACGT-----LAQQGYAVGFLDDSKASISSRTLYYDGDQRSTGGADQRQT 58
           V K   I  A++ GT      + Q  + GF++DSK S+ +R LY+  D R+  G   R+ 
Sbjct: 3   VMKWSMIALAVSAGTSQLAMASAQDESKGFIEDSKLSVKTRMLYFSRDFRNNEGGQSRRE 62

Query: 59  LTGLRL--DFQSGYTEGVVGLGLDLQALAGFTLSGGTSPHNASTVNTVSPVTTDGSPVDN 116
            TGL     F+SG+T+G VG+G+D   + G  L  G           + P  +DG   D+
Sbjct: 63  ETGLGFVGTFESGFTQGTVGVGVDAIGMLGLKLDSGKGRAGTG----LFPTGSDGRSQDD 118

Query: 117 WSRIGGNARFKYSKTELKAGNALTFNLPVLISNDGRLLPASFQGAALTSNEFENLTLNGG 176
           +S+ GG  +F+ S T LK G+  T  LPV  ++D RLLP   QG  +TSNE E LTL+ G
Sbjct: 119 YSKGGGAVKFRISDTVLKVGDQFTA-LPVFATDDSRLLPEIAQGTLITSNEIEGLTLHAG 177

Query: 177 FLNRAIGRASSNWAGISGGGAKGSDGFAFAGGDWNVRKNLKLQYYYANLEDYYSQNFLGL 236
                  +  +N       G K ++     GG +    NL    YY+ +EDY+ + +  +
Sbjct: 178 HFTSLTAQEQTNRDSF---GLKEAN---VVGGTYAFTDNLSTSLYYSKVEDYWRKYYANV 231

Query: 237 IHSFDMGVGQSLTTDLRYFKSDSDGKNGTDSRYALRNGYNENGKIDNTTWSLAFTYKAGG 296
             +  +   Q L  D   + + S+G     + Y   +G     K+DN  +SL+  Y  G 
Sbjct: 232 NWALPISDNQGLVFDFNIYDTKSEG----SAEYRAFDG----DKLDNRAFSLSGAYNIGA 283

Query: 297 HALTLGHQQVSDKSGFATVNSSNVVDGRGRPEGEGGVQSLYLYTDVMVNSFTRAGENSTF 356
           H  TL +Q+V+    +        +DG G         +++L   V  + F    E S  
Sbjct: 284 HTFTLAYQKVTGDGDY-----GYGIDGGG---------TIFLANSVARSDFNAEDEKSWQ 329

Query: 357 GLYSYDFAALGVPGLKAGWTYVSGKDIRGTGNTTTGRYNEWESDYRLDYVLQSGTFKGLG 416
             Y  +FA  G+PGL     YV G D    G T+ G+  EWE D  + YVLQ G  K L 
Sbjct: 330 ARYDLNFAEYGIPGLTFMTRYVRGSDANVAG-TSNGK--EWERDVDIKYVLQEGPAKDLS 386

Query: 417 FTLRKGVFRTGLPDSTLKDQ---DQVRFFVNYTYAL 449
           F +R+  +R+   D    D    D++R  V Y  ++
Sbjct: 387 FRVRQATYRSS--DGVYYDSPSIDELRLIVEYPLSI 420