Pairwise Alignments

Query, 450 a.a., putative Porin from Pseudomonas putida KT2440

Subject, 439 a.a., outer-membrane porin D from Pseudomonas putida KT2440

 Score =  178 bits (451), Expect = 4e-49
 Identities = 149/460 (32%), Positives = 211/460 (45%), Gaps = 38/460 (8%)

Query: 5   TKVKRILAALACGTLAQ---QGYAVGFLDDSKASISSRTLYYDGDQRSTGGADQRQTLTG 61
           T++  +  A+   T AQ   Q  + GF++DS A++  R  Y + D++  G  DQ +    
Sbjct: 4   TRISLVALAMIAATQAQANDQADSKGFIEDSHANVLLRNAYINRDKKH-GTDDQIEWGQA 62

Query: 62  LRLDFQSGYTEGVVGLGLDLQALAGFTLSGGTSPHNASTVNTVSPVTT-----DGSPVDN 116
              +F SG+T+G VG+G+D   L    L GG   +    V+   P  T     + S   N
Sbjct: 63  FIANFSSGFTQGTVGVGVDAFGLYAVRLDGGKGHNGGGGVDFFKPHETTNAEGNASSPHN 122

Query: 117 WSRIGGNARFKYSKTELKAGNALTFNLPVLISNDGRLLPASFQGAALTSNEFENLTLNGG 176
            +R G   +F+ S T LK G+ +   LPVL  +D RLLP SF G  +TS E + L LN G
Sbjct: 123 LARGGAAVKFRISNTVLKYGDQMPA-LPVLQYDDARLLPESFTGTLITSKEIQGLELNAG 181

Query: 177 FLNRAIGRASSNWAGISGGGAKGSDGFAFAGGDWNVRKNLKLQYYYANLEDYYSQNFLGL 236
              R    A  +     GGG K  +     GG +    N     Y A+ ED   +++LGL
Sbjct: 182 ---RFTQEARKSAERRDGGGLKSIN---VLGGSYKFTDNFTASLYTADNEDVMKKHYLGL 235

Query: 237 IHSFDMGVGQSLTTDLRYFKSDSDGKNGTDSRYALRNGYNENGKIDNTTWSLAFTYKAGG 296
            + F +   QSLT D   +KSD + K      Y    G N +    NT WSLA TY  G 
Sbjct: 236 NYVFPIASDQSLTLDFNGYKSDINNK------YVKAAGLNGD---SNTIWSLAATYAYGA 286

Query: 297 HALTLGHQQVSDKSGFATVNSSNVVDGRGRPEGEGGVQSLYLYTDVMVNSFTRAGENSTF 356
           H+ TL HQ+ +  +G+   N     +  G   G+GG  ++YL      + F    E S  
Sbjct: 287 HSFTLAHQRSTGSTGY---NYGFYQNAGG--VGDGG-STIYLANSYW-SDFNAEDERSWQ 339

Query: 357 GLYSYDFAALGVPGLKAGWTYVSGKDI--RGTGNTT-TGRYNEWESDYRLDYVLQSGTFK 413
             Y  DF A G+PGL     YV G +I  R   N    G   E E   ++ YV+Q G  K
Sbjct: 340 LGYGLDFGAYGIPGLTYKLAYVVGDNINTRNVANPQGFGEGKEREIFNQIRYVVQDGPAK 399

Query: 414 GLGFTLRKGVFRTG---LPDSTLKDQDQVRFFVNYTYALW 450
            L   LR    RT      +    D ++VR FV Y  +++
Sbjct: 400 DLSIKLRSSFLRTNNAVQQNGYNDDGNEVRVFVEYPISIF 439