Pairwise Alignments

Query, 365 a.a., transposase from Pseudomonas putida KT2440

Subject, 361 a.a., Mobile element protein from Variovorax sp. SCN45

 Score =  303 bits (776), Expect = 5e-87
 Identities = 158/345 (45%), Positives = 212/345 (61%), Gaps = 8/345 (2%)

Query: 6   IVLSDDEQVELNRRVRSATISQRDGRRARVILLAAQGHSRNEIAELTGLSVVSVTRWCKR 65
           +VLS  E+ +L    +    +Q    RAR++L  A+G   N +A    ++  +V++W  R
Sbjct: 9   LVLSATEREQLIALTKRRKTAQALALRARIVLACAEGADNNVVAARLRVTQQTVSKWRGR 68

Query: 66  FQALRLQGLVDLPGRGRKPSLPAE----ALQRTLEQVTQPRIGQPRWSCRSMARVAGISP 121
           F   RL GL+D P  G   ++        + RTLE V     G   WS RSMAR   +S 
Sbjct: 69  FVQKRLDGLLDAPRPGAPRTIDDARVDAVIARTLESVPA---GATHWSTRSMARAMDVSQ 125

Query: 122 ASVQRIWAANDIKPHLTRTFKLSNDPQFEEKFWDVIGLYLAPPDKALVLCCDEKSQVQAL 181
            +V RIW A  ++PH   TFKLS+DP F EK  D++GLYL PP KA+VLC DEKSQ+QAL
Sbjct: 126 TAVTRIWRAFGLQPHRQETFKLSSDPLFVEKVRDIVGLYLDPPLKAMVLCVDEKSQIQAL 185

Query: 182 QRTQPGLPLGIGHIRTQTHDYVRHGTLTLFAAMDYLQGRLISSIETQHRHQEWLAFLKKI 241
            RTQP LPL  G    +THDY+RHGT TLFAA+D   G +I  +  +HR  E+L FL+ I
Sbjct: 186 DRTQPILPLAPGIPERRTHDYMRHGTTTLFAALDIATGEVIGELHRRHRSTEFLQFLRTI 245

Query: 242 NRETPKGLQLHLIVDNYATHKHPVVKEWLKRHPRFHLHFTPTSSSWMNMVERFFRDIT-V 300
               P  L +HL++DNY THK   +K W  RHPRFH+HFTPTS+SW+N VER+F  +T  
Sbjct: 246 EANVPAALDVHLVMDNYGTHKTASIKAWFARHPRFHVHFTPTSASWLNQVERWFATLTEK 305

Query: 301 YLRDGSFSSTRELASSITTFLALHNAQPSRYVWSAKGEDILRKIQ 345
           Y+R G+  STR+L  +I  +L L+NA P  +VW+   EDIL  ++
Sbjct: 306 YIRRGTHRSTRQLEQAIRQYLELNNADPKPFVWAKSAEDILASVE 350