Pairwise Alignments

Query, 526 a.a., putative Opine ABC transporter, periplasmic binding protein from Pseudomonas putida KT2440

Subject, 533 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  133 bits (335), Expect = 1e-35
 Identities = 136/511 (26%), Positives = 225/511 (44%), Gaps = 51/511 (9%)

Query: 12  ALAALVTLSGI---SPLALAQDSARATISVSPGIADITSLDPHRASLVGDKGIVAE-MFN 67
           AL  L+  +G+    PLA A  +       SP        DP + +   D    AE +FN
Sbjct: 5   ALKPLLLAAGLLACMPLAQAASTLVYCSEASPA-----GFDPSQYTSGTDFDASAETVFN 59

Query: 68  ALVRFPPGSSDPAALEADLAERWESSDDKKVWTFFLRKGVMFH-----GGYGELKAADVV 122
            L +F  G ++   +E  LA  W+ S D   +TF LR GV FH         +  A DV+
Sbjct: 60  RLTQFKRGGTE---VEPGLATSWDISQDGLTYTFHLRDGVKFHTTDFFSPTRDFNADDVL 116

Query: 123 YSLQRAAD---------PKRSSFSANF---TALEKVEALDDYTVKVTLKYPDTAFLGRVS 170
           ++  R  D         P  S +  +    T ++ V+ LDD+TV+  L   D +F+  ++
Sbjct: 117 FTFNRLLDAQSPFRQAYPSESPYFTDMGLNTTIKSVDKLDDHTVRFNLNNVDASFVQNLA 176

Query: 171 NYHGGQIVSKAAAEKL----GERYGQAPIGTGPFAFSEHITQQYVKLVANDQYFRGKP-K 225
                   ++ AA+ L     E   Q P+GTGPF F  +     ++ VAN QY++ +  K
Sbjct: 177 MSFASVQSAEYAAQLLKQGKAEEINQKPVGTGPFVFKRYQKDSQIRYVANKQYWKPEDVK 236

Query: 226 LGAIVYRMIPSDSARELAFASDELDLMLGKREQRWVERSRARGVNVDVFEPAEFRTLFLN 285
           L  +V+ + P  ++R     + E  +  G      +E  + +  N+ V + A F   FL 
Sbjct: 237 LDNLVFAITPDAASRLQKLKAGECQVS-GYPRPADIEVMK-QDPNLHVLQQAGFNLGFLA 294

Query: 286 RNIK--PLDDVKVRQAIAASVNINEIIRYAGKDVADGGCSIIPNGYQGLDCSAGPYAYDP 343
            N+   PLD +KVRQA+  +++   II+   +       + +P      D +     YDP
Sbjct: 295 YNVTHPPLDQLKVRQALDMAIDKPAIIKAVYQSAGQLAQNALPPAQWSYDPTIKDAPYDP 354

Query: 344 AHAKALLASAGYPNG----LKLKSVVSNAAPQLPI-MEIIQAQLAKAGITLEMEVVDHAT 398
             AKALL  AG   G    L   +V   + P   +  ++IQ    K GI   +   +   
Sbjct: 355 TKAKALLKEAGVAPGTTVNLWAMTVQRASNPNARMSAQMIQQDWEKVGIKANIVSYEWGE 414

Query: 399 YQAKSRQDQSAIVFYGAARYPG-ADYWLTEFYDSASAIGAPAAMSNFGH-CSVA-DDAIR 455
           Y  +++  +   + YG     G  D WL   Y  A+  G     SN+   C+ A D  ++
Sbjct: 415 YIKRAKNGEHDAMIYGWTGDNGDPDNWLGVLYSCAAVKG-----SNYAKWCNPAYDKLVQ 469

Query: 456 KARVEADPQTQLDLWKKAQVQIHDDVCAIPL 486
           +A+V  D + ++  +++AQ  + + V   P+
Sbjct: 470 QAKVSNDREQRIKWYQQAQKILKEQVPITPI 500