Pairwise Alignments

Query, 526 a.a., putative Opine ABC transporter, periplasmic binding protein from Pseudomonas putida KT2440

Subject, 542 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  120 bits (301), Expect = 1e-31
 Identities = 133/518 (25%), Positives = 221/518 (42%), Gaps = 57/518 (11%)

Query: 12  ALAALVTLSGISPLALAQDSARATISVSPGIADITSLDPHRASLVGDKGIVAE-MFNALV 70
           A+  L+  +G+   A    +A   +  S G       DP + +   D    AE MFN L 
Sbjct: 5   AVIPLIVSAGLMAAAPFAQAATNLVFCSEGSP--AGFDPGQYTTGTDFDASAETMFNRLT 62

Query: 71  RFPPGSSDPAALEADLAERWESSDDKKVWTFFLRKGVMFHG-GYGE----LKAADVVYSL 125
           +F  G +   A+   LA  W+ S D   +TF LR GV FH   Y +      A DV+++ 
Sbjct: 63  QFERGGT---AVIPGLATSWDVSPDGLTYTFHLRDGVKFHTTSYFKPTRTFNADDVLFTF 119

Query: 126 QRAA---DPKRSSFSANF---------TALEKVEALDDYTVKVTLKYPDTAFLGRVSNYH 173
            R     DP R ++   F         T ++ +E +D++TVK TL   D AF+  ++   
Sbjct: 120 NRMINKDDPFRKAYPTEFPYFTDMGMDTNIKNIEKVDEHTVKFTLGTVDAAFIQNLAMSF 179

Query: 174 GGQIVSKAAAEKLGER----YGQAPIGTGPFAFSEHITQQYVKLVANDQYFRGKP-KLGA 228
                ++ AA+ L E       Q PIGTGPF F  +     ++   N  Y++ +  K+  
Sbjct: 180 ASIQSAEYAAQLLKEGKPADINQKPIGTGPFVFKSYQKDSNIRYTGNKDYWKPEDVKIDN 239

Query: 229 IVYRMIPSDSARELAFASDELDLMLGKREQRWVERSRARGVNVDVFEP--AEFRTLFLNR 286
           +++ +    S R      +E  + L  R        +A G + D+  P  A F   ++  
Sbjct: 240 LIFAITTDPSVRIQKLKKNECQITLFPRPADL----KALGDDKDLKLPHQAGFNLGYIAY 295

Query: 287 NI----------KPLDDVKVRQAIAASVNINEIIRYAGKDVADGGCSIIPNGYQGLDCSA 336
           N+           PL D++VRQA+  SVN  +II    +       + +P      D + 
Sbjct: 296 NVMDKVKGSDQPNPLADLRVRQALDMSVNKQQIIDSVYQGAGQLAVNAMPPTQWSYDTTI 355

Query: 337 GPYAYDPAHAKALLASAGYPNGLKL----KSVVSNAAPQLPIM-EIIQAQLAKAGITLEM 391
               YDP  AK+LL  AG   G ++      V     P   +M E++Q    K G+ +++
Sbjct: 356 KDAKYDPEKAKSLLKEAGIKEGTEIVLWAMPVQRPYNPNAKLMAEMLQNDWKKIGLNVKI 415

Query: 392 EVVDHATYQAKSRQDQSAIVFYGAARYPG-ADYWLTEFYDSASAIGAPAAMSNFGH-CSV 449
              +   Y  +S+  ++  +  G +   G  D WL   +   S  G     +NF   C  
Sbjct: 416 TSYEWGEYIKRSKGGENQAMIIGWSGDNGDPDNWLNVLFGCDSLSG-----NNFSKWCDK 470

Query: 450 A-DDAIRKARVEADPQTQLDLWKKAQVQIHDDVCAIPL 486
             D  +++A+  +D   + +L+K+AQ  + D V   P+
Sbjct: 471 KFDGIVKEAKATSDVAKRTELYKQAQHILKDAVPMTPI 508