Pairwise Alignments

Query, 526 a.a., putative Opine ABC transporter, periplasmic binding protein from Pseudomonas putida KT2440

Subject, 530 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  141 bits (355), Expect = 7e-38
 Identities = 141/511 (27%), Positives = 214/511 (41%), Gaps = 46/511 (9%)

Query: 8   LRSSALAALVTLSGISPLALAQDSARATISVSPGIADITSLDPHRASLVGDKGIVAEMFN 67
           +R +AL  L+    I+PLA A  +       SP   D+   +    SL         + N
Sbjct: 1   MRLAALPLLLAPLFIAPLASAASNLSVCTEASPEGFDVVQYN----SLTTTNASADVLMN 56

Query: 68  ALVRFPPGSSDPAALEADLAERWESSDDKKVWTFFLRKGVMFHGGY-----GELKAADVV 122
            LV +   S     L   LA+ WE S D   +TF L   V FH          L A DV 
Sbjct: 57  RLVDYDAASGK---LVPSLADSWEVSPDGLTYTFKLHPDVKFHRTEYFTPSRTLTAEDVR 113

Query: 123 YSLQRAADPKR---SSFSANF---------TALEKVEALDDYTVKVTLKYPDTAFLGRVS 170
           +S +R  DP         + F         T ++K++ALD  TV+ TL + D+ FL  +S
Sbjct: 114 FSFERMLDPANPWHKIAQSGFPHAQSLQLPTLVKKIDALDPLTVRFTLDHADSTFLAALS 173

Query: 171 ----NYHGGQIVSKAAAEKLGERYGQAPIGTGPFAFSEHITQQYVKLVANDQYFRGKPKL 226
               + +  +   K       E+    PIGTGPF FS       V+  AN  YF GKP +
Sbjct: 174 MGFASIYPAEYAEKLLKAGTPEKLNSQPIGTGPFIFSRFQKDAVVRYKANPNYFAGKPPV 233

Query: 227 GAIVYRMIPSDSARELAFASDELDLMLGKREQRWVERSRARGVNVDVFEPAEFRTLFL-- 284
             +++ + P  + R      DE  + L  +     E  +   + V+  + A F T FL  
Sbjct: 234 DNLIFAITPDANVRLQKLHRDECQIALSPKPLDVGEAEKDPALKVE--KTAAFMTAFLAI 291

Query: 285 NRNIKPLDDVKVRQAIAASVNINEIIRYAGKDVADGGCSIIPNGYQGLDCSAGPYAYDPA 344
           N    PLD  +VRQAI  + +    ++   +  A+      P            Y  D A
Sbjct: 292 NSQHPPLDKPEVRQAINLAFDKGSYLKAVFEGTAEAANGPYPPNTWSYAKDLPGYPQDLA 351

Query: 345 HAKALLASAGYPNGLKL------KSVVSNAAPQLPIMEIIQAQLAKAGITLEMEVVDHAT 398
            AKALL  AG  +G K          + N  P L   +++QA LAK GI  E+ V++   
Sbjct: 352 KAKALLDRAGLKDGFKTTIWTRPTGSLLNPNPNLG-AQLLQADLAKVGIQAEIRVIEWGE 410

Query: 399 YQAKSRQDQSAIVFYGAARYPG-ADYWLTEFYDSASAIGAPAAMSNFG-HCSVA-DDAIR 455
              +++  +  ++F G A   G  D +LT  +  A    A  + +NF  +C  A D  I 
Sbjct: 411 LIRRAKAGEHDLLFMGWAGDNGDPDNFLTPQFSCA----AVKSGTNFARYCDPALDKLIS 466

Query: 456 KARVEADPQTQLDLWKKAQVQIHDDVCAIPL 486
             +  ++   +  L+++AQ QI      +PL
Sbjct: 467 AGKTTSEQGVRSKLYQQAQAQIQQQALWLPL 497