Pairwise Alignments

Query, 526 a.a., putative Opine ABC transporter, periplasmic binding protein from Pseudomonas putida KT2440

Subject, 543 a.a., Dipeptide ABC transporter, substrate-binding protein DppA (TC 3.A.1.5.2) from Variovorax sp. SCN45

 Score =  139 bits (350), Expect = 3e-37
 Identities = 143/506 (28%), Positives = 217/506 (42%), Gaps = 37/506 (7%)

Query: 1   MKALGLTLRSSALAALVTLSGISPLALAQDSARATISVSPGIADITSLDPHRASLVGDKG 60
           MK      R S   AL+  + I+ L LA  +  A   V        +  P   +      
Sbjct: 1   MKTQSTVSRRSRSLALLAPTAIAALTLACGAVSAKTLVYCSEGSPENFYPGMNTTGTSFD 60

Query: 61  IVAEMFNALVRFPPGSSDPAALEADLAERWESSDDKKVWTFFLRKGVMFHGGYGELK--- 117
           +  +++N +V F  G +    +   LAE+W+ S D  V+TF LRKGV +H      K   
Sbjct: 61  VTTQVYNTIVEFERGGTK---VVPGLAEKWDISADGTVYTFHLRKGVKWHTTSKSFKPTR 117

Query: 118 ---AADVVYSLQRA---ADPKRSSFSANFT---------ALEKVEALDDYTVKVTLKYPD 162
              A D ++ L+R    +DP     S N +          L+ V+ +DDYTVK+ L  P+
Sbjct: 118 DFNADDFIFMLERQWKESDPFFKVTSQNHSYFNDMGMPKLLKTVDRIDDYTVKIVLNQPE 177

Query: 163 TAFLGRVSNYHGGQIVSKA---AAEKLG--ERYGQAPIGTGPFAFSEHITQQYVKLVAND 217
             FL  ++  + G I SK    A  K G  E+  Q PIGTGPF   ++     ++  A  
Sbjct: 178 APFLANLAMQYAG-IQSKEYAIAMLKAGTPEKVDQDPIGTGPFYLVQYQKDAVIRFKAFP 236

Query: 218 QYFRGKPKLGAIVYRMIPSDSARELAFASDELDLMLGKREQRWVERSRARGVNVDVFEPA 277
           QY+ GK K+  +V+ + P  S R       E  +M        ++  R +  NV V E  
Sbjct: 237 QYWGGKAKIDDLVFAITPDASVRWAKLQKGECHVMPYPNPAD-LDAIR-KDPNVQVLEQP 294

Query: 278 EFRTLFLNRNI--KPLDDVKVRQAIAASVNINEIIRYAGKDVADGGCSIIPNGYQGLDCS 335
                +L+ N   KP DDV+VR+AI  ++N   II            + IP      + +
Sbjct: 295 GLNVGYLSYNTTKKPFDDVRVRKAINMAINKKAIIDGVYLTTGVAAKNPIPPTMWSYNDA 354

Query: 336 AGPYAYDPAHAKALLASAGYPNGLKLKS-VVSNAAPQLP----IMEIIQAQLAKAGITLE 390
                YDP  AK LLA AGYP+G       +    P  P    I E++QA LAK  +  E
Sbjct: 355 VKDDPYDPEAAKKLLAQAGYPDGFSTDLWAMPVQRPYNPNAKRIAELMQADLAKINVKAE 414

Query: 391 MEVVDHATYQAKSRQDQSAIVFYGAARYPG-ADYWLTEFYDSASAIGAPAAMSNFGHCSV 449
           ++  +   Y+ + +  +  +   G     G  D +L      ASA  A  +  +      
Sbjct: 415 IKSFEWGEYRKRLQAGEHQMGMLGWTGDNGDPDNFLYTLLGCASAKSASGSNISKFCYQP 474

Query: 450 ADDAIRKARVEADPQTQLDLWKKAQV 475
            +D + KA+       +  L+KKAQV
Sbjct: 475 YEDLVVKAKSTVKQADRDALYKKAQV 500