Pairwise Alignments

Query, 526 a.a., putative Opine ABC transporter, periplasmic binding protein from Pseudomonas putida KT2440

Subject, 521 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  146 bits (369), Expect = 2e-39
 Identities = 141/510 (27%), Positives = 233/510 (45%), Gaps = 47/510 (9%)

Query: 16  LVTLSGISPLALAQDSARATISVSPGIAD-ITSLDPHRASLVGDKGIVAEMFNALVRFPP 74
           L+ +   + LA    ++  T+S+  G AD ++S+DP   +  GD+ +    +++++    
Sbjct: 4   LLPIVAAALLATGVSASAQTLSI--GFADPVSSVDPELNNHAGDRSLALHFWDSIIN--- 58

Query: 75  GSSDPAALEADLAERWESSDDKKVWTFFLRKGVMFHGGYGELKAADVVYSLQRAADPKRS 134
            S D   LE  LA  W++ DDK  W F LR  + +  G     A D+V+S QR+ +   S
Sbjct: 59  -SRDGGKLEPALASSWKALDDK-TWEFKLRTDIKWQDGT-PFSADDIVFSFQRSRNVPGS 115

Query: 135 --SFSANFTALEKVEALDDYTVKVTLKYPDTAFLGRVSNYHGGQIVSKAAAEKLG-ERY- 190
             S+S     +E V A D  T+ V    P+      +++ +   IVSK   EK   E Y 
Sbjct: 116 VASYSGALRTVESVTAKDPATLIVKTNTPNPMLPLEIASIY---IVSKHVGEKSKTEDYN 172

Query: 191 -GQAPIGTGPFAFSEHITQQYVKLVANDQYFRGKPKLGAIVYRMIPSDSARELAFASDEL 249
            G+A +GTGP+ F  ++         N  Y+  KP    + YR I + +AR  A  + ++
Sbjct: 173 AGRAVVGTGPYKFVSYVPGDRTVFERNPGYYGPKPLWEKVNYRFINNGAARTAALLAGDV 232

Query: 250 DLMLGKREQRWVERSRARGVNVDVFEPAEFRTLFLNRNIK------------------PL 291
           D ++ K     VE+ R +   V V+     R L L    K                  PL
Sbjct: 233 D-VIDKVAVTDVEKLR-KDPKVSVYTYPGLRVLLLQPTFKAGPNEFITDNAGKPLEKNPL 290

Query: 292 DDVKVRQAIAASVNINEIIRYAGKDVADGGCSIIPNGYQGLDCSAGPYAYDPAHAKALLA 351
            DV+VRQA++ ++N   I+    +         +P G  G +      AY+   AK LLA
Sbjct: 291 LDVRVRQALSLAINRKAIVDRVLQGTVTEANQWMPKGSFGYNPDVKDIAYNAEQAKKLLA 350

Query: 352 SAGYPNGLKLK-SVVSNAAPQLPIMEIIQAQL---AKAGITLEMEVVDHATYQAKSRQDQ 407
            AG+P G ++   V  +  PQ P  E +QA     ++ G+  ++EVV  A Y  ++ +++
Sbjct: 351 EAGFPQGFQIAIHVPGDRYPQAP--ETVQAVAQFWSRIGVKTKVEVVPWAVYSGRANKNE 408

Query: 408 SAIVFYGAARYPG-ADYWLTEFYDSASAIGAPAAMSNFGHCS--VADDAIRKARVEADPQ 464
            A+         G A Y L +   +  A     + +N+G  S    D A+  A VE D +
Sbjct: 409 YAVSVIAWGNGTGEAGYGLLQTLTTPDAKRGRGS-NNWGRYSNESVDKALDAATVEFDAK 467

Query: 465 TQLDLWKKAQVQIHDDVCAIPLFGLKQVWA 494
            +  +++ A   + DDV  IPL+  + +WA
Sbjct: 468 RREAIFRHAAKLVTDDVGQIPLYHYQNIWA 497