Pairwise Alignments

Query, 290 a.a., putative Opine ABC transporter, permease protein from Pseudomonas putida KT2440

Subject, 284 a.a., peptide ABC transporter permease from Pseudomonas simiae WCS417

 Score =  230 bits (586), Expect = 3e-65
 Identities = 119/285 (41%), Positives = 181/285 (63%), Gaps = 4/285 (1%)

Query: 2   TTLTAPLVSKPTTLWQALFQNRLSWIGIGLLVMIVLVALFAPLIAPYDPLQQNIAYRLEP 61
           +T+  P+ +K   +W     N L  IG GLLV+++ +AL   + +P+DPL+ ++  R + 
Sbjct: 3   STIAVPVAAKRRRVWAPA--NAL--IGGGLLVVLIALALMGLVWSPFDPLKIDLMSRFQA 58

Query: 62  PSAEFWLGTDTYGRDVLSRLIYGTRVSLLVGFVAVMIAMVVGSALGVIAGYVGGITDRLI 121
           PSA  WLGTD +GRDV SRL+ G R SL V  + V +A++ G+ +G++AGY+ G TDR++
Sbjct: 59  PSAAHWLGTDEFGRDVFSRLLIGARTSLWVSLLTVSVAVLAGTLIGMLAGYLRGWTDRVL 118

Query: 122 TGFVDVLLSFPTLLLGLMVAAMLGASLENLIIAIAITEIAPFVRIARAPTIALKQRDFVE 181
             F D LL+FP +L+ L + A++GAS   +++A+ I      VR+ R   ++L++ +++E
Sbjct: 119 MMFNDALLAFPGILMALGIMAIIGASKYGIVLALGIAYTPSVVRVVRGTVLSLRELEYIE 178

Query: 182 AGRSLGYGPGRLMTVHILPNMISEVLVLGALWMATAIRTEASLSFIGLGVPPPAPTWGSM 241
           A R +G      M  HI PN ++ + VL       A+ +E++LSF+GLGVPPPA TWG+M
Sbjct: 179 ASRVIGNSELYTMLRHIAPNCLAPLCVLATSMFGWALLSESALSFLGLGVPPPAATWGNM 238

Query: 242 IREGFENILDAWWLTVFPSLAILLTVLALSLLGDALRDANDPKTR 286
           +      I  A WL VFP L I LT+LA++L GDALRD  DP+ R
Sbjct: 239 LASSRPYIASAPWLGVFPGLFICLTLLAINLFGDALRDRLDPRMR 283