Pairwise Alignments

Query, 373 a.a., putative Group II intron-encoding maturase from Pseudomonas putida KT2440

Subject, 398 a.a., Retron-type reverse transcriptase from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  224 bits (570), Expect = 4e-63
 Identities = 127/327 (38%), Positives = 184/327 (56%), Gaps = 9/327 (2%)

Query: 3   YRATPSRRVYIPKADGRQRPLGIASLEDKIVQQAVVTVLNAIYEEDFLGFSYGFRPGRSQ 62
           Y+A   RRVYIPK    +RPLGI ++EDK++Q +V +VL  IYEEDF  FSYGFRP RS 
Sbjct: 69  YKAPQIRRVYIPKGKTGKRPLGIPTIEDKVLQPSVRSVLEPIYEEDFKEFSYGFRPNRSC 128

Query: 63  HDALDALTVALKGQKVNWILDADITSFFDEIDHEWMLMFLGHRIADRRLLGLICKWLQAG 122
           H A++ +   +   ++ +I+DADI  +F  IDH  + +FL  R+ D  +  ++ KWL+AG
Sbjct: 129 HHAIEYMFEKVSYGRMRYIIDADIQDYFGSIDHGLLRVFLDRRVKDGVVRKMLDKWLKAG 188

Query: 123 VMEDGRRVVATKGTPQGAVISPLLANIYLHYVLDLWARQWRQRHARGDVIIVRYADDSVV 182
           ++ED +      GTPQG ++SP+L+NIYLHYVLD W     Q    G   +VRYADD V+
Sbjct: 189 ILEDKQLHYPKGGTPQGGIVSPILSNIYLHYVLDEWFSDKIQPLLTGKSFMVRYADDFVM 248

Query: 183 GFRTKVQAQQFLVQLQERLARFGLSLNASKTRLIEFGRFAARNRRKRGLGKPETFDFLGF 242
           GF     A++ +  L +R  ++GL L+  KT++I+       N   RG     +FDFLGF
Sbjct: 249 GFEKGEDAKRVMAVLDKRFTKYGLRLHPEKTKVIDL------NTNIRG---ERSFDFLGF 299

Query: 243 THCCSTNRSGGFQILRLTVKKRMRAMLLAMRDELKHRRHEPIWVQGQWLTRVVSGYFNYH 302
            H     R G   + R T  K++   +    D +K  RH  +      L   + G++ Y+
Sbjct: 300 AHYMGKTRKGRLVLKRKTSSKKLVMAITKTGDWIKGNRHRKLKELICDLNVRLRGHYAYY 359

Query: 303 AVPGNLTRLGGFRSAVCRLWRQALKRR 329
            V  N+  L  +   V RL  + L RR
Sbjct: 360 GVTFNVRSLNKYHRCVERLLHKWLNRR 386