Pairwise Alignments

Query, 284 a.a., Amino acid ABC transporter, periplasmic amino acid-binding protein from Pseudomonas putida KT2440

Subject, 250 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score = 66.6 bits (161), Expect = 5e-16
 Identities = 59/196 (30%), Positives = 92/196 (46%), Gaps = 13/196 (6%)

Query: 58  DGKVTGESPEIATAIFKQLGIKDVNGVLTEWGSLIPGLRAGRFDAIAAGMYITPARCKQV 117
           +GK TG   E+  AI K LG K +  +  ++  L+PGL + RFD   +G+YIT  R K V
Sbjct: 47  NGKRTGFDVELVEAIGKTLGRK-IEWIDIDFKGLVPGLISKRFDMAVSGIYITDERKKVV 105

Query: 118 LFTDPHYQLPDALLVPKGNPKELFSYEDVAKNPEVKLAIMAGTVELQYARDSGVKDEQIL 177
            FT P+Y     ++V  GN     + +  A     K+++  GT  + Y ++      Q++
Sbjct: 106 DFTVPYYAGGLVVMVKDGNT----AIKTPADINGKKVSVQVGTKSVSYTKEK-FPQVQLM 160

Query: 178 QVPDTTAQLQAVRAKRADAAV-GTQLTMKGLAAKGGDSVEAMTDFKDDPSHIGYGALAFR 236
           +V         V   RADAAV G     + +  +GG  V       +  +   YG +A R
Sbjct: 161 EVEKNQEMFNLVDIGRADAAVTGKPAAYQYVRTRGGLKV-----LPEQITTEEYG-MAIR 214

Query: 237 PEDKELRDQVNAQLKK 252
            +  EL   VN  ++K
Sbjct: 215 KDTPELTKAVNGAIEK 230