Pairwise Alignments

Query, 284 a.a., Amino acid ABC transporter, periplasmic amino acid-binding protein from Pseudomonas putida KT2440

Subject, 250 a.a., L-lysine and D-lysine ABC transporter, substrate-binding component (from data) from Pseudomonas putida KT2440

 Score = 71.6 bits (174), Expect = 2e-17
 Identities = 63/227 (27%), Positives = 106/227 (46%), Gaps = 15/227 (6%)

Query: 51  PFAYTGTDGKVTGESPEIATAIFKQLGIKDVNGVLTEWGSLIPGLRAGRFDAIAAGMYIT 110
           PF Y   D K+ G   +I  A+ +Q+ + +   V  +W  +IP L A ++DAI A M  T
Sbjct: 34  PFNYVDADNKLHGFDVDITHALCEQMKV-ECTLVAQDWEGIIPALMARKYDAIVASMIDT 92

Query: 111 PARCKQVLFTDPHYQLPDALLVPKGNPKELFSYEDVAKNPEVKLAIMAGTVELQ--YARD 168
             R K++ FTD +Y+ P  + V K       S  D A+   V   + A +   Q  YA D
Sbjct: 93  EERRKKIAFTDHYYRTPLTVAVAKD------SKIDSAQTDFVGYTVGAQSSSTQAIYAED 146

Query: 169 SGVKDEQILQVPDTTAQLQA-VRAKRADAAVGTQLTM-KGLAAKGGDSVEAMTDFKDDPS 226
              K    +++  T  +  A + A R D  +  +  + + +   GGD  + + D  D  +
Sbjct: 147 VYGKAGADVKLYPTMDEANADLAAGRLDGVIADKFPLHEWMNKNGGDCCKILGDVADTKA 206

Query: 227 HIGYGALAFRPEDKELRDQVNAQLKKWLGSEEHLKTVAP-FGFDKSN 272
                A+A R +D+ LR ++N  L++ + +  + K  +  F FD  N
Sbjct: 207 D---AAIAVRKDDEALRQRLNTALQQIVANGTYQKIASKYFAFDIYN 250