Pairwise Alignments

Query, 460 a.a., putative Gamma-aminobutyrate transporter from Pseudomonas putida KT2440

Subject, 469 a.a., GABA permease from Pseudomonas simiae WCS417

 Score =  318 bits (815), Expect = 2e-91
 Identities = 174/445 (39%), Positives = 260/445 (58%), Gaps = 6/445 (1%)

Query: 6   LKQSLKQRHITMIALGGVIGAGLFMGSGSLIASAGPAAILSYFIGGLVVTLVMFMLGEMA 65
           L Q  K RH+TM+++ G+IGAGLF+GSG  IA+AGPA +L+Y   G +V LVM MLGEMA
Sbjct: 13  LAQGFKPRHVTMLSIAGIIGAGLFVGSGHAIAAAGPAVLLAYLFSGTLVVLVMRMLGEMA 72

Query: 66  CRNPDAGSFSTYANTYLGDWAGFAVGWLYWFKSMMTITLEAVLLGAILHDFLPWLPIWAG 125
             NPD GSFSTYA+  +G WAGF +GWLYW+  ++ I +EA+  G IL+ + P +  W  
Sbjct: 73  VANPDTGSFSTYADQAIGRWAGFTIGWLYWWFWVLVIPIEALAAGHILNQWFPQIDAWLF 132

Query: 126 AFLMLVTLMASNAYSVRSFAEVEYWLAAMKVATILIFMLLGVSILLGLHSDIPAPGLINL 185
           A L +  L+ +N +SV  + E E+W A  KV  I+ F+ LG ++L+G   +    GL  L
Sbjct: 133 ALLSIFLLVVTNLFSVSKYGEFEFWFAMAKVIAIIAFIGLGFAVLMGWIPEREVSGLSRL 192

Query: 186 -TAHDGFMPNGLSPVMAGVIVVIFSLGGSEIAAVAAGESENPRQNVIRAIKSVILRVMLF 244
              H GF PNGLS V+   I ++FS  G+E   +AA ES NP QN+ RA +SV+ R+ +F
Sbjct: 193 MEEHGGFAPNGLSAVVGAFITIMFSFIGTEAVTIAAAESSNPAQNIARATRSVMWRIGVF 252

Query: 245 YVGSVSILILCLPWTDKANLAS--PYVSLFSLAGFGGAAVAMKLVLFVSFMSVMNSFMFS 302
           Y+ S+ ++I  +PW D   LAS   Y     L     A + + +V+ ++  S MNS ++ 
Sbjct: 253 YLLSIFVVISVVPWNDPL-LASVGSYQRALELMNIPHAKLLVDVVVLIAVASCMNSSIYI 311

Query: 303 NSRMLFSLSQRGHAPKLFSRTSAKGVPINALLLSLSICTMILTVHFVSGGDLFMTLAKST 362
            SRMLFSL +RG AP L  +TSA  VP  A++ S  +   +    + +   LF  L  S+
Sbjct: 312 ASRMLFSLGKRGDAPALMKKTSAASVPRAAVIASTILGAGVTLFSYFAPAGLFQFLLASS 371

Query: 363 GSLVMVVWIFIIIAHVAMRIKTRHEAVAPNAFRAWLFPYTNIIALFALLAVIGTQAFDPA 422
           G++ ++V++ I ++ + MR   R   V    F+ WLFP+   + +  + A +      P 
Sbjct: 372 GAIALLVYLVIAVSQLRMRKILRQRNVT-LTFQMWLFPWLTWLVIAFICAALTVMLVTPE 430

Query: 423 SRFQFWFTV-LTVLLVVAGYFLMRQ 446
            RF+   T+ L +++ + G    RQ
Sbjct: 431 HRFEVSSTIGLALVISLVGLLTARQ 455