Pairwise Alignments

Query, 460 a.a., putative Gamma-aminobutyrate transporter from Pseudomonas putida KT2440

Subject, 463 a.a., gamma-aminobutyrate permease from Pseudomonas putida KT2440

 Score =  303 bits (777), Expect = 6e-87
 Identities = 163/434 (37%), Positives = 252/434 (58%), Gaps = 3/434 (0%)

Query: 6   LKQSLKQRHITMIALGGVIGAGLFMGSGSLIASAGPAAILSYFIGGLVVTLVMFMLGEMA 65
           L Q  K RH+TM+++ G+IGAGLF+GSG  IA+AGPA I+SYF+ G +V LVM MLGEMA
Sbjct: 10  LAQGFKPRHVTMLSIAGIIGAGLFVGSGHAIAAAGPATIISYFVAGTLVVLVMRMLGEMA 69

Query: 66  CRNPDAGSFSTYANTYLGDWAGFAVGWLYWFKSMMTITLEAVLLGAILHDFLPWLPIWAG 125
             +PD GSFSTYA+  +G WAG+ +GWLYW+  ++ I +EA+  G +L+ + P +  W  
Sbjct: 70  VAHPDTGSFSTYADQAIGRWAGYTIGWLYWWFWVLVIPIEALAAGHVLNAWFPQVDSWIF 129

Query: 126 AFLMLVTLMASNAYSVRSFAEVEYWLAAMKVATILIFMLLGVSILLGLHSDIPAPGLINL 185
           A   ++ L  +N +SV  + E E+W A +KV  IL F+ LG + L+    +    GL  L
Sbjct: 130 ALASVLLLAGTNLFSVAKYGEFEFWFAILKVTAILGFIGLGFAALMDWLPNREVSGLSGL 189

Query: 186 TA-HDGFMPNGLSPVMAGVIVVIFSLGGSEIAAVAAGESENPRQNVIRAIKSVILRVMLF 244
            A + GF P G S V+   I V+FS  G+E   +AA ES +P +N+ +A +SVI R+  F
Sbjct: 190 MAEYGGFAPKGWSAVVGAFITVMFSFIGTEAVTIAASESSDPSRNIAKATRSVIWRISTF 249

Query: 245 YVGSVSILILCLPWTD-KANLASPYVSLFSLAGFGGAAVAMKLVLFVSFMSVMNSFMFSN 303
           Y+ S+ ++I  +PW D +  +   Y     +     AA  + LV+ V+  S MNS ++  
Sbjct: 250 YILSIFVIISVVPWNDPQLAVVGSYQRALEIMNIPNAAFMVDLVVLVAVTSCMNSSIYIA 309

Query: 304 SRMLFSLSQRGHAPKLFSRTSAKGVPINALLLSLSICTMILTVHFVSGGDLFMTLAKSTG 363
           SRM+FSL++RG AP   ++TS  GVP  A+  S  I   I  +++ +   +F  L  S+G
Sbjct: 310 SRMMFSLAKRGDAPAFLNKTSKVGVPRAAVFGSTLIGAAIAVLNYFAPKGVFEFLLASSG 369

Query: 364 SLVMVVWIFIIIAHVAMRIKTRHEAVAPNAFRAWLFPYTNIIALFALLAVIGTQAFDPAS 423
           ++ ++V++ I I+ + MR +   E      FR WLFPY     +  +   +    + P  
Sbjct: 370 AIALLVYMVIAISQLRMRRRLERENTELK-FRMWLFPYLTWAVIIFIAGALAVMMYTPEH 428

Query: 424 RFQFWFTVLTVLLV 437
           R +   T+   +++
Sbjct: 429 RAEVSSTLGLAIVI 442



 Score = 31.2 bits (69), Expect = 8e-05
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 390 APNAFRAWLFPYTN--IIALFALLAVIGTQAFDPAS--RFQFWFTVLTVLLVV 438
           A +   AW FP  +  I AL ++L + GT  F  A    F+FWF +L V  ++
Sbjct: 113 AGHVLNAW-FPQVDSWIFALASVLLLAGTNLFSVAKYGEFEFWFAILKVTAIL 164