Pairwise Alignments

Query, 451 a.a., two component system AtoC DNA-binding transcriptional activator from Pseudomonas putida KT2440

Subject, 478 a.a., sigma-54 dependent DNA-binding response regulator from Sphingobium sp. HT1-2

 Score =  316 bits (810), Expect = 9e-91
 Identities = 196/464 (42%), Positives = 259/464 (55%), Gaps = 30/464 (6%)

Query: 5   VLLVEDDRVLRQALGDTLEIGGFAYQAVGSAEEALEAV-LEDAFSL--VVSDVNMPGMDG 61
           ++L++D+   R+ +       G+       AE AL  +  +D   L  V+ D   P  D 
Sbjct: 9   LMLIDDEPAQRRLVSALAARAGWRTIFASDAETALATLGTQDGIQLDAVLIDQWSPDFDP 68

Query: 62  HQLLSQLRRQQPQLPVLLMTAHAAVERAVEAMRQGAADYLVKPFEPKALLNLVERHAAGR 121
             L+  +  Q+P LP+L++TAH +V  AV+AMR GA DYL KP  P+ LL  +     G 
Sbjct: 69  ADLIGDIHAQRPALPILVLTAHNSVAVAVQAMRAGATDYLSKPIAPERLLAALNATLEGN 128

Query: 122 VTGEEGP--------------VACEPASRQLLELAARVARSDSTVLISGESGTGKEVLAR 167
           V GE  P              V   P  R  L +AA+ AR+   VLI GESG GK+V+AR
Sbjct: 129 VRGELRPLTEKISAPLAFEDVVGAAPQFRTALAIAAKAARARVPVLIEGESGVGKDVVAR 188

Query: 168 YIHQQSPRAAQPFVAINCAAIPDNMLEATLFGHEKGAFTGAIAAQAGKFEQAEGGTLLLD 227
            IH  SPR  Q  V +NC AIP N++E+ LFGHE+GAFTGA     GKF  A+ GT+ LD
Sbjct: 189 AIHAASPRHKQAMVTVNCGAIPANLVESELFGHERGAFTGAFDRHVGKFLSADMGTIFLD 248

Query: 228 EISEMPMALQAKLLRVLQEREVERVGGRKPISLDIRVLATTNRDLAGEVAAGRFREDLYY 287
           E+SEMP+  Q KLLRVLQ+ EV+ +G R+P+ +D+RV+A TN+ L+ E+ AGRFREDLYY
Sbjct: 249 EVSEMPLDAQVKLLRVLQDGEVQPIGARRPVHVDVRVIAATNKKLSDEIEAGRFREDLYY 308

Query: 288 RLSVFPLAWRPLRERPGDILQLAERLLARHVAKMKHASVRLSPAARACLQAYAWPGNVRE 347
           RL+V  L   PLRER GDI  L   LLAR   +     + L+  A A L  + WPGNVR+
Sbjct: 309 RLNVVQLTVPPLRERMGDIPALCRHLLARIATQPGLRGLGLTDDALALLMQHDWPGNVRQ 368

Query: 348 LDNALQRALILQQGGVIEAADFCLAGAIPLSAGTEPSLEVVA-----DAGGL----GDDM 398
           L NAL RA +L +G  +   DF    A  LS G     +  A     +A G+    GD  
Sbjct: 369 LQNALFRAAVLCEGDALTPHDFPQVAAHILSRGASGPRQRAAATPPREAAGITLFEGDGH 428

Query: 399 RRHEYQMIIDTLRAE----RGRRKEAAERLGISPRTLRYKLAQM 438
            R   ++  D +R      RGR  E A RLGI   TL  KLA++
Sbjct: 429 VRQLAEIEADVIRLAIGHYRGRMTEVARRLGIGRSTLYRKLAEL 472