Pairwise Alignments

Query, 451 a.a., two component system AtoC DNA-binding transcriptional activator from Pseudomonas putida KT2440

Subject, 463 a.a., DNA-binding transcriptional regulator NtrC from Methylophilus sp. DMC18

 Score =  298 bits (762), Expect = 3e-85
 Identities = 176/458 (38%), Positives = 268/458 (58%), Gaps = 26/458 (5%)

Query: 5   VLLVEDDRVLRQALGDTLEIGGFAYQAVGSAEEALEAVLEDAFSLVVSDVNMPGMDGHQL 64
           + +++DD+ +R      L    F ++   S  EAL A+  +   ++VSD+ MP   G   
Sbjct: 4   IWILDDDKSIRWVFEKALARTDFDFKTFSSPAEALNALNREQPQVIVSDIRMPNGSGLDF 63

Query: 65  LSQLRRQQPQLPVLLMTAHAAVERAVEAMRQGAADYLVKPFEPKALLNLVER------HA 118
           LS+++++ P++PV++MTA++ +E AV A + GA +YL KPF+    + +++R        
Sbjct: 64  LSEVKQRFPEIPVIIMTAYSDLESAVAAFQGGAFEYLAKPFDVDQAIEIIKRAVEESMRQ 123

Query: 119 AGRVTGEEGP----VACEPASRQLLELAARVARSDSTVLISGESGTGKEVLARYIHQQSP 174
           +     + GP    +   PA +++     R++RS STVLI+GESG+GKE++A  +H+ SP
Sbjct: 124 SVEAVEDTGPSPEIIGQAPAMQEVFRAIGRLSRSHSTVLINGESGSGKELVASALHRHSP 183

Query: 175 RAAQPFVAINCAAIPDNMLEATLFGHEKGAFTGAIAAQAGKFEQAEGGTLLLDEISEMPM 234
           RA +PF+AIN AAIP ++LE+ LFGHE+GAFTGA AA+ G+FEQA+ GTL LDEI +MP 
Sbjct: 184 RADKPFIAINTAAIPKDLLESELFGHERGAFTGAAAARRGRFEQADNGTLFLDEIGDMPA 243

Query: 235 ALQAKLLRVLQEREVERVGGRKPISLDIRVLATTNRDLAGEVAAGRFREDLYYRLSVFPL 294
            LQ +LLRVL + +  RVGG +PI +++RV+A T++DL   V  G FREDL++RL+V  L
Sbjct: 244 DLQTRLLRVLSDGQFYRVGGHQPIKVNVRVIAATHQDLEERVKQGLFREDLFHRLNVIRL 303

Query: 295 AWRPLRERPGDILQLAERLLARHVAKMKHASVRLSPAARACLQAYAWPGNVRELDNALQR 354
              PLRER  DI  L +  LA    ++     +LS AA   L +  W GNVR+L+N    
Sbjct: 304 RLPPLRERREDIPLLTKHFLAHSAQQLGVEPKQLSQAAIKYLMSVNWSGNVRQLENVCHW 363

Query: 355 ALILQQGGVIEAADFCLAGAIPLSAGTEPS--------LEVVADAGGLGD----DMRRHE 402
             ++  G  ++  D  L   +    G   S         + V DA   G+    D +  E
Sbjct: 364 LTVMAPGQNVDVND--LPPELKEDTGKHSSGGSWQEALAQEVTDALNRGETNILDAKTKE 421

Query: 403 YQMIIDT--LRAERGRRKEAAERLGISPRTLRYKLAQM 438
           ++ I+ T  L    GRR EAA +LG+   TL  K+ ++
Sbjct: 422 FERILITRALAHTDGRRIEAANQLGMGRNTLTRKIQEL 459