Pairwise Alignments

Query, 380 a.a., flagellin export apparatus, substrate specificity protein from Pseudomonas putida KT2440

Subject, 360 a.a., type III secretion system export apparatus subunit SctU from Erwinia tracheiphila SCR3

 Score =  134 bits (338), Expect = 3e-36
 Identities = 109/351 (31%), Positives = 179/351 (50%), Gaps = 28/351 (7%)

Query: 9   DKTEDPTEKRKRDAREKGEVARSKELNTVAVTLAGAGGLLAFGGHVAETLLALMRMNFSL 68
           +KTE PT+++ +DAR KG+V++S+E+  + +       +L       + L ALM +  + 
Sbjct: 3   EKTEKPTKQKLQDARRKGQVSQSQEVPKLFICAGIVEMVLTLDDVGMQKLQALMMLPLA- 61

Query: 69  TRDIIVDERAMGAFLLASGKMAIWAVQPVLILLFV-VSFVAPIALSGF------LFSGSL 121
                   R    F LA+ ++   A+  V     V VS  A + + G       LF+   
Sbjct: 62  --------RISQPFELAANEVVGSALTLVATFCGVTVSLAALLRIIGGWIQYGPLFAPEA 113

Query: 122 LQPKFSRMNPLSGIKRMFSMQALTELLKALAKFFVILVVAVVVLSGDRQALLSIANEPLE 181
           L+P F+R++P++  K+MFS++ LT++L ++ K   I  +  +V++ D ++L  ++   L+
Sbjct: 114 LKPDFNRLDPINQFKQMFSVKKLTDMLNSILKAAAICTIFYLVMTPDLESLARLSYGDLD 173

Query: 182 Q---AIIHSLQVVGWSALWMSAGLLLIAAADVPFQLYQTHKKMKMTKQEVRDEYKDSEGK 238
               A+   L  V    L     LL++   D   Q Y   K+ +M+ Q++RDE+K SEG 
Sbjct: 174 SFWPAVEVILTRVSRQTL---LTLLVLTMLDFGLQKYFFIKQQRMSHQDIRDEHKQSEGN 230

Query: 239 PEVKQRIRQLQREVSQRRMMAA----VPDADVIITNPTHYAVALQYDPEKGGAAPLLLAK 294
           P +K   + L  E+    + A     V +AD+++ NPTHYAVAL Y PE     P ++ K
Sbjct: 231 PHMKGHRKALAHELLNEPVKAVKSKPVEEADLLLVNPTHYAVALYYRPEL-TPLPRIICK 289

Query: 295 GSDFMALKIREIGVEHNIQILESPALARAIYYSTELEQEIPAGLYLAVAQV 345
           G D  A ++     + NI ++    LAR +Y S E  Q IP     AVAQV
Sbjct: 290 GEDKEAKELITRAQKANIPVIRFIWLARTLYRSQE-GQMIPRHTLQAVAQV 339