Pairwise Alignments

Query, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

Subject, 624 a.a., RNA polymerase sigma factor RpoD from Rhodanobacter sp000427505 FW510-R12

 Score = 66.6 bits (161), Expect = 1e-15
 Identities = 63/237 (26%), Positives = 107/237 (45%), Gaps = 21/237 (8%)

Query: 13  AKDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDASKGASFE 72
           A+ A+ E++E    LV  IA     R    +Q  DLIQ G IGL++  +K++  +G  F 
Sbjct: 382 ARRAKKEMVEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 438

Query: 73  TYAGIRIRGAMLDEVRKGDWA-----PRSVHRNTRMVSDAMRAVEARTGRDAKDHEVAAE 127
           TYA   IR A+   +   D A     P  +      ++   R +  + GR+A   E+A E
Sbjct: 439 TYATWWIRQAITRSI--ADQARTIRIPVHMIETINKLNRISRQMLQQFGREATPEELAKE 496

Query: 128 LQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLH---EDGASGQVEPARGLEEERFQA 184
           +++  D    +L   +     S +  + D E   L    EDG +    P     E     
Sbjct: 497 MEMPEDKIRKVLK--IAKEPISMETPIGDDEDSHLGDFIEDGNAS--SPIDSATETGLME 552

Query: 185 ALTEAIANLPERERLVLALYYDEELN----LKEIGEVLGVSESRVSQLHSQCAARLR 237
            + + +A L  RE  VL + +  ++N    L+E+G+   V+  R+ Q+ ++   +LR
Sbjct: 553 TVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 609