Pairwise Alignments

Query, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

Subject, 666 a.a., RNA polymerase sigma factor RpoD from Xanthobacter sp. DMC5

 Score = 62.0 bits (149), Expect = 3e-14
 Identities = 61/240 (25%), Positives = 106/240 (44%), Gaps = 23/240 (9%)

Query: 11  RAAKDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDASKGAS 70
           + A+ A+ E++E    LV  IA     R    +Q  DLIQ G IGL++  +K++  +G  
Sbjct: 423 KEARQAKKEMVEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYK 479

Query: 71  FETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAMRAVEA------RTGRDAKDHEV 124
           F TYA   IR A+   +   D A R++     M+    + V          GR+    E+
Sbjct: 480 FSTYATWWIRQAITRSI--ADQA-RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEEL 536

Query: 125 AAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLH---EDGASGQVEPARGLEEER 181
           A +L + L+    +L   +     S +  + D E   L    ED     + P     +  
Sbjct: 537 AEKLGMPLEKVRKVLK--IAKEPISLETPIGDEEDSHLGDFIED--KNAILPIDAAIQSN 592

Query: 182 FQAALTEAIANLPERERLVLALYYDEELN----LKEIGEVLGVSESRVSQLHSQCAARLR 237
            +   T  +A+L  RE  VL + +   +N    L+E+G+   V+  R+ Q+ ++   +L+
Sbjct: 593 LRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 652