Pairwise Alignments

Query, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

Subject, 616 a.a., RNA polymerase subunit sigma-70 from Pseudomonas simiae WCS417

 Score = 58.2 bits (139), Expect = 4e-13
 Identities = 60/237 (25%), Positives = 103/237 (43%), Gaps = 21/237 (8%)

Query: 13  AKDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDASKGASFE 72
           A+ A+ E++E    LV  IA     R    +Q  DLIQ G IGL++  +K++  +G  F 
Sbjct: 375 ARRAKKEMVEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 431

Query: 73  TYAGIRIRGAMLDEVRKGDWA-----PRSVHRNTRMVSDAMRAVEARTGRDAKDHEVAAE 127
           TYA   IR A+   +   D A     P  +      ++   R +    GR+    E+   
Sbjct: 432 TYATWWIRQAITRSI--ADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGER 489

Query: 128 LQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLH---EDGASGQVEPARGLEEERFQA 184
           +++  D    +L   +     S +  + D E   L    ED  S    P      E  + 
Sbjct: 490 MEMPEDKIRKVLK--IAKEPISMETPIGDDEDSHLGDFIED--STMQSPIDVATVESLKE 545

Query: 185 ALTEAIANLPERERLVLALYYDEELN----LKEIGEVLGVSESRVSQLHSQCAARLR 237
           A  + ++ L  RE  VL + +  ++N    L+E+G+   V+  R+ Q+ ++   +LR
Sbjct: 546 ATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 602