Pairwise Alignments

Query, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

Subject, 246 a.a., flagellar biosynthesis sigma factor from Pseudomonas simiae WCS417

 Score =  439 bits (1130), Expect = e-128
 Identities = 220/246 (89%), Positives = 234/246 (95%)

Query: 1   MNASGFKMYSRAAKDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVA 60
           M A+G+  Y R+A+D+Q ELIERYAPLVKRIAYHLLARLPA+VQVEDLIQAGMIGLLEV+
Sbjct: 1   MTATGYNAYKRSARDSQGELIERYAPLVKRIAYHLLARLPASVQVEDLIQAGMIGLLEVS 60

Query: 61  NKYDASKGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAMRAVEARTGRDAK 120
            KYDASKGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDA+RA+EA+TGRDAK
Sbjct: 61  TKYDASKGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAIRAIEAKTGRDAK 120

Query: 121 DHEVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASGQVEPARGLEEE 180
           DHEVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGAS  +EP+R LE+E
Sbjct: 121 DHEVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASAHMEPSRDLEDE 180

Query: 181 RFQAALTEAIANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRSRL 240
           RFQ AL +AIANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLR RL
Sbjct: 181 RFQGALADAIANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRGRL 240

Query: 241 GEWRAR 246
           GEWRAR
Sbjct: 241 GEWRAR 246