Pairwise Alignments

Query, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

Subject, 228 a.a., RNA polymerase sigma factor for flagellar operon from Variovorax sp. SCN45

 Score = 76.3 bits (186), Expect = 5e-19
 Identities = 55/207 (26%), Positives = 100/207 (48%), Gaps = 6/207 (2%)

Query: 42  NVQVEDLIQAGMIGLLEVANKYDASKGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNT 101
           +V+ ED +Q   IGL+E  +++D  +GA F+T+A  R++GA+L+ + +     + +  + 
Sbjct: 14  DVEFEDYLQFARIGLIEAIDRFDPLRGAQFKTFATKRVQGAILNGLARFTEKNQQIALSM 73

Query: 102 RMVSDAMRAVEARTGRDAK------DHEVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQ 155
           R+  + + AV+    + A       D   +      L  Y   +   L   +   D  + 
Sbjct: 74  RLRRERLEAVKDAAAQAAPGAAQGTDSPPSGRQPEELFRYLAEVGIGLALSVMLEDTGMI 133

Query: 156 DGEHEGLHEDGASGQVEPARGLEEERFQAALTEAIANLPERERLVLALYYDEELNLKEIG 215
           D    G      S +V   R  E  + ++ L   +  L E++R+V+  +Y +E+  +EI 
Sbjct: 134 DSGAPGDTGQLPSPEVSYFRQSEIAQLRSVLRNLVDRLGEQQRMVIHQHYLQEVPFEEIA 193

Query: 216 EVLGVSESRVSQLHSQCAARLRSRLGE 242
             +G++  RVSQLH Q   RLR  LG+
Sbjct: 194 RRVGLTRGRVSQLHRQALGRLRELLGK 220