Pairwise Alignments

Query, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

Subject, 244 a.a., RNA polymerase sigma factor for flagellar operon from Variovorax sp. SCN45

 Score =  191 bits (486), Expect = 9e-54
 Identities = 101/240 (42%), Positives = 155/240 (64%), Gaps = 7/240 (2%)

Query: 8   MYSRAAKDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDASK 67
           +Y+      +  L+ ++ PLV+RIA  ++A+LPA+V+++DLIQAGM+GLL+ +++Y  ++
Sbjct: 1   VYTAQGTIEKSHLLAQHQPLVRRIALQMMAKLPASVELDDLIQAGMLGLLDASSRYQDNR 60

Query: 68  GASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAMRAVEARTGRDAKDHEVAAE 127
           GA FET+   RIRGAMLDE+R  DW  R + ++ R +  A+ A+  R GR   + E+A E
Sbjct: 61  GAQFETFVSQRIRGAMLDELRANDWGSRGLRQSARGIEKAIHALGHRLGRAPSEGEIAKE 120

Query: 128 LQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHE---GLHEDGA----SGQVEPARGLEEE 180
           L++ L+ Y  +L +  G +L   +D  +D        +H   A     G  +P   L E 
Sbjct: 121 LKMDLEAYQSMLQEIQGCQLLYVEDFAKDDPDNPFLDIHSKDARRDRRGGDDPLEQLLES 180

Query: 181 RFQAALTEAIANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRSRL 240
            F+  L +AI+ LPER++L+L LYY+EELNL+EIG +L VS+SRV QLHSQ  +RLR++L
Sbjct: 181 GFRHQLVDAISALPERDQLLLNLYYEEELNLREIGAILEVSQSRVCQLHSQAISRLRAKL 240