Pairwise Alignments

Query, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

Subject, 245 a.a., RNA polymerase sigma factor for flagellar operon from Sphingobium sp. HT1-2

 Score =  139 bits (350), Expect = 5e-38
 Identities = 81/236 (34%), Positives = 131/236 (55%), Gaps = 7/236 (2%)

Query: 9   YSRAA-KDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDASK 67
           Y RA   ++  +L  RY PLV++IA+H+  R+ + ++VEDL+Q GM+ L+E AN ++  +
Sbjct: 15  YGRAGLANSPEQLARRYMPLVRKIAWHVHGRVSSAIEVEDLLQIGMVALVESANSFE-DR 73

Query: 68  GASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAMRAVEARTGRDAKDHEVAAE 127
           G  F +YA +R+RGAM+D +R+     RS     + ++     +E + GR   + E+AAE
Sbjct: 74  GLGFASYAQLRVRGAMIDHLRRHSTLCRSAMATRKKLAATRAKLEQKLGRAPLEAEMAAE 133

Query: 128 LQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASGQVEPARGLEEERFQAALT 187
           L +   DY    +     +  S D++  D        +  +  +     +E E  + AL 
Sbjct: 134 LGMDAADYREAADGAEMVQHTSIDEVYSDQSMWFADVEDRADDI-----MERESLKGALA 188

Query: 188 EAIANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRSRLGEW 243
           + I  LPERE LVL LY+ EELNL+EIG+ L +  +RV Q+      +LR +L +W
Sbjct: 189 KCIGELPEREALVLQLYFVEELNLEEIGQTLDIGAARVCQIKKSALDKLRGKLIDW 244