Pairwise Alignments

Query, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

Subject, 616 a.a., RNA polymerase, sigma 70 (sigma D) factor from Pseudomonas putida KT2440

 Score = 58.2 bits (139), Expect = 4e-13
 Identities = 60/237 (25%), Positives = 103/237 (43%), Gaps = 21/237 (8%)

Query: 13  AKDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDASKGASFE 72
           A+ A+ E++E    LV  IA     R    +Q  DLIQ G IGL++  +K++  +G  F 
Sbjct: 375 ARRAKKEMVEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 431

Query: 73  TYAGIRIRGAMLDEVRKGDWA-----PRSVHRNTRMVSDAMRAVEARTGRDAKDHEVAAE 127
           TYA   IR A+   +   D A     P  +      ++   R +    GR+    E+   
Sbjct: 432 TYATWWIRQAITRSI--ADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGER 489

Query: 128 LQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLH---EDGASGQVEPARGLEEERFQA 184
           +++  D    +L   +     S +  + D E   L    ED  S    P      E  + 
Sbjct: 490 MEMPEDKIRKVLK--IAKEPISMETPIGDDEDSHLGDFIED--STMQSPIDVATVESLKE 545

Query: 185 ALTEAIANLPERERLVLALYYDEELN----LKEIGEVLGVSESRVSQLHSQCAARLR 237
           A  + ++ L  RE  VL + +  ++N    L+E+G+   V+  R+ Q+ ++   +LR
Sbjct: 546 ATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 602