Pairwise Alignments

Query, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

Subject, 679 a.a., RNA polymerase sigma factor RpoD from Magnetospirillum magneticum AMB-1

 Score = 62.8 bits (151), Expect = 2e-14
 Identities = 64/240 (26%), Positives = 105/240 (43%), Gaps = 23/240 (9%)

Query: 11  RAAKDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDASKGAS 70
           R A  A+ E+IE    LV  IA     R    +Q  DLIQ G IGL++  +K++  +G  
Sbjct: 436 REASRAKKEMIEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYK 492

Query: 71  FETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAMRAVEA------RTGRDAKDHEV 124
           F TYA   IR A+   +   D A R++     M+    + V          GR+    E+
Sbjct: 493 FSTYATWWIRQAITRSI--ADQA-RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEEL 549

Query: 125 AAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLH---EDGASGQVEPARGLEEER 181
           A +L + L+    +L   +     S +  + D E   L    ED     V P     +  
Sbjct: 550 AEKLSMPLEKVRKVLK--IAKEPISLETPIGDEEDSHLGDFIED--KNAVLPLDAAIQAN 605

Query: 182 FQAALTEAIANLPERERLVLALYYDEELN----LKEIGEVLGVSESRVSQLHSQCAARLR 237
            +   T  +A+L  RE  VL + +   +N    L+E+G+   V+  R+ Q+ ++   +L+
Sbjct: 606 LRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 665