Pairwise Alignments

Query, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

Subject, 240 a.a., RNA polymerase sigma factor FliA from Dickeya dianthicola ME23

 Score =  207 bits (528), Expect = 1e-58
 Identities = 117/240 (48%), Positives = 153/240 (63%), Gaps = 12/240 (5%)

Query: 7   KMYSRAAKDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDAS 66
           ++Y+      +  L +RY PLV+  A  L  RLPA+V+++DL+QAG IGLL    +YD+ 
Sbjct: 3   ELYTAEGTMDKNSLWKRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLSAVERYDSL 62

Query: 67  KGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAMRAVEARTGRDAKDHEVAA 126
           +G +F TYA  RIRGAMLDE+R  DWAPRSV RN R V+ AM+  E   GR   + EVA 
Sbjct: 63  QGTAFTTYAVQRIRGAMLDELRSRDWAPRSVRRNAREVAQAMQQAEQSLGRAPTEQEVAQ 122

Query: 127 ELQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASGQVE------PARGLEEE 180
            L +SL++Y  IL DT  S+LFS+D+  ++      H D A   +E      P   L + 
Sbjct: 123 TLNISLEEYRQILLDTNNSQLFSYDEWREE------HGDSAEALLEGNEEANPLNQLMDV 176

Query: 181 RFQAALTEAIANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRSRL 240
             +  + +AI NLPERE++VL LYY EELNLKEIG VL V ESRVSQLHSQ   RLR++L
Sbjct: 177 NLRQRVMDAIDNLPEREKMVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRAKL 236