Pairwise Alignments

Query, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

Subject, 611 a.a., RNA polymerase sigma factor RpoD from Dickeya dianthicola ME23

 Score = 62.0 bits (149), Expect = 3e-14
 Identities = 60/235 (25%), Positives = 104/235 (44%), Gaps = 17/235 (7%)

Query: 13  AKDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDASKGASFE 72
           A+ A+ E++E    LV  IA     R    +Q  DLIQ G IGL++  +K++  +G  F 
Sbjct: 370 ARRAKKEMVEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 426

Query: 73  TYAGIRIRGAMLDEVRKGDWA-----PRSVHRNTRMVSDAMRAVEARTGRDAKDHEVAAE 127
           TYA   IR A+   +   D A     P  +      ++   R +    GR+    E+A  
Sbjct: 427 TYATWWIRQAITRSI--ADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAER 484

Query: 128 LQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASGQVE-PARGLEEERFQAAL 186
           + +  D    +L   +     S +  + D E   L +      +E P      E  ++A 
Sbjct: 485 MLMPEDKIRKVLK--IAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRSAT 542

Query: 187 TEAIANLPERERLVLALYYDEELN----LKEIGEVLGVSESRVSQLHSQCAARLR 237
            + +A L  RE  VL + +  ++N    L+E+G+   V+  R+ Q+ ++   +LR
Sbjct: 543 HDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 597