Pairwise Alignments

Query, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

Subject, 287 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 66.2 bits (160), Expect = 7e-16
 Identities = 51/199 (25%), Positives = 93/199 (46%), Gaps = 10/199 (5%)

Query: 47  DLIQAGMIGLLEVANKYDASKGASFETYAGIRIRGAMLDEVRKGD---WAPRSVHRNTRM 103
           DLI  G +GL++ A ++D ++G  F +YA   IR ++L  + +       P +   +   
Sbjct: 78  DLINEGNLGLIKAAQRFDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNRVGSLNK 137

Query: 104 VSDAMRAVEARTGRDAKDHEVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLH 163
           +S     +E R  R+    E+A  L+++  +    +   +  R  S D     GE   L 
Sbjct: 138 ISKTFSELEQRFEREPSPEELAEVLEVTAGEVVDTMK--ISGRHVSMDAPFVQGEENSLL 195

Query: 164 ED-GASGQVEPARGLEEERFQAALTEAIANLPERERLVLALYY----DEELNLKEIGEVL 218
           +     G+ +P  GL  +  +  +  A++ L +RE  V+ LY+    +  + L+EIGE  
Sbjct: 196 DVLENDGEEKPDDGLMNDSLRKEVQRALSTLTQREADVITLYFGLNGEHAMTLEEIGEKF 255

Query: 219 GVSESRVSQLHSQCAARLR 237
            ++  RV Q+  +   RLR
Sbjct: 256 NLTRERVRQIKEKAIRRLR 274