Pairwise Alignments

Query, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

Subject, 677 a.a., RNA polymerase sigma factor RpoD from Azospirillum sp. SherDot2

 Score = 60.8 bits (146), Expect = 7e-14
 Identities = 62/240 (25%), Positives = 104/240 (43%), Gaps = 23/240 (9%)

Query: 11  RAAKDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDASKGAS 70
           + A  A+ E++E    LV  IA     R    +Q  DLIQ G IGL++  +K++  +G  
Sbjct: 434 KEASRAKKEMVEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYK 490

Query: 71  FETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAMRAVEA------RTGRDAKDHEV 124
           F TYA   IR A+   +   D A R++     M+    + V          GR+    E+
Sbjct: 491 FSTYATWWIRQAITRSI--ADQA-RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEEL 547

Query: 125 AAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLH---EDGASGQVEPARGLEEER 181
           A  L + L+    +L   +     S +  + D E   L    ED     V P     +  
Sbjct: 548 AERLMMPLEKVRKVLK--IAKEPISLETPIGDEEDSHLGDFIED--KNAVLPLDAAIQAN 603

Query: 182 FQAALTEAIANLPERERLVLALYYDEELN----LKEIGEVLGVSESRVSQLHSQCAARLR 237
            +   T  +A+L  RE  VL + +   +N    L+E+G+   V+  R+ Q+ ++   +L+
Sbjct: 604 LRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLK 663