Pairwise Alignments

Query, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

Subject, 684 a.a., RNA polymerase sigma factor RpoD from Agrobacterium fabrum C58

 Score = 60.8 bits (146), Expect = 7e-14
 Identities = 62/240 (25%), Positives = 106/240 (44%), Gaps = 23/240 (9%)

Query: 11  RAAKDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDASKGAS 70
           R A+ A+ E++E    LV  IA     R    +Q  DLIQ G IGL++  +K++  +G  
Sbjct: 441 REARIAKKEMVEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYK 497

Query: 71  FETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAMRAVEA------RTGRDAKDHEV 124
           F TYA   IR A+   +   D A R++     M+    + V          GR+    E+
Sbjct: 498 FSTYATWWIRQAITRSI--ADQA-RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEEL 554

Query: 125 AAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLH---EDGASGQVEPARGLEEER 181
           A +L + L+    +L   +     S +  + D E   L    ED     + P     +  
Sbjct: 555 AEKLAMPLEKVRKVLK--IAKEPISLETPVGDEEDSHLGDFIED--KNALLPIDAAIQAN 610

Query: 182 FQAALTEAIANLPERERLVLALYYDEELN----LKEIGEVLGVSESRVSQLHSQCAARLR 237
            +   T  +A+L  RE  VL + +   +N    L+E+G+   V+  R+ Q+ ++   +L+
Sbjct: 611 LRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 670