Pairwise Alignments

Query, 747 a.a., Chemotaxis histidine kinase CheA from Pseudomonas putida KT2440

Subject, 1934 a.a., histidine kinase from Pseudomonas simiae WCS417

 Score =  239 bits (611), Expect = 8e-67
 Identities = 211/771 (27%), Positives = 355/771 (46%), Gaps = 71/771 (9%)

Query: 6    DEEILQDFLVEAGEILEQLSEQLVELESRPDDADLLNAIFRGFHTVKGGAGFLQLNELVE 65
            D+EI++ FL EA +IL+   + L      PD+A  L+++ R  HT+KGGA   ++  + +
Sbjct: 1042 DDEIVEIFLEEAVDILDSAGQSLKRWLLEPDNAAPLSSLQRDLHTLKGGARMAEIEAIGD 1101

Query: 66   CCHIAENVFDVLRKGERRVDAELMDVVLEALDTVNSMFGQVRERAEVTPATPALLAALSR 125
              H  E +++ L        AEL  V++ + + +     ++     ++ +  A L A  R
Sbjct: 1102 LAHELECLYEGLVDRRYSYTAELSHVLMASHERLALQLEELHHHQPLSDS--AELIARVR 1159

Query: 126  LAEPGAAEAVAAPVPAPVADVVAAAPAEAEEQHQDITDSEFEQLLDSLDAIKAQAAADEQ 185
                G+A A  AP  AP A       + A+ +  DI   E   +LDS  A  ++  A+  
Sbjct: 1160 ALRQGSAPA--APAAAPPA-------SGADPELLDIFLEEAADILDSSSAALSRWQAEPG 1210

Query: 186  MQGE---------TVSGAGDEITDAEFESLLDQLHGKGQ-FNAEVAAPP----------- 224
             + E         T+ G    +  A    L  +L    +  +A + AP            
Sbjct: 1211 NRQEVETLLRDLHTLKGGARMVEIAPIGDLAHELEFLYEGLSAGLLAPSPELFALLQGCH 1270

Query: 225  --VAVSSEVVSDEITDAEFESLLDQLH-----GKGTFQAGALPAAQAPAPAAPDNSAASD 277
              +A   + V+D +     + L++++              ALPA +A A   P   A   
Sbjct: 1271 DRLAQMIDAVADGLPVGSVDKLIERIKTLVHPSDEPVTPVALPAGKAEAVVDP--MADMV 1328

Query: 278  EISEHEFEALLDQLHGKGKFGGDVAAVEAPAAVQAQAPAAAKAESQPVAKPAAAPAPSPA 337
            +IS      LLD L       G+ +        Q      A  E +   +          
Sbjct: 1329 KISAE----LLDDLVN---LAGETSIFRGRIEQQVNDARIALTEVETTIERMRDQLRRLD 1381

Query: 338  SKPAAAPRAPAPAAEKHAASEAETTVRVDT-ARLDEIMNMVGE----LVLVRNRLVRLGL 392
            ++      +   A  +    E    + +D  ++L ++   + E    L+ +++ L R   
Sbjct: 1382 TETQGRILSRQQAEAERLGYEDFDPLEMDRHSQLQQLSRALSESASDLLDLKDTLERRNE 1441

Query: 393  NSGDEAMSKAVSNLDVVTADLQTAVMKTRMQPIKKVFGRFPRLVRDLARQLKKEINLELV 452
            ++ D    +A  N      +LQ  +M+TRM P +++  R  R+VR +A +L K++   + 
Sbjct: 1442 DAHDLLQQQARIN-----TELQEGLMRTRMVPFERMLPRLKRIVRQVAEELGKDVEFIVG 1496

Query: 453  GEETDLDKNLVEALADPLVHLVRNAVDHGIEMPDEREASGKARTGRVVLSAEQEGDHILL 512
              E ++D+N++E +A PL H++RNAVDHG+E  D R  +GK   GR+ L    EG  I+ 
Sbjct: 1497 NAEGEMDRNVLERMAAPLEHMLRNAVDHGLESRDARLLAGKPEKGRITLDLTHEGGDIVF 1556

Query: 513  SISDDGKGMDPNILRAKAVEKGLMDKDAAERLSESDCYNLIFAPGFSTKTEISDVSGRGV 572
             + DDG G+    +R KA+++GL+D +  + +S+ D    I  PGFST  +I+ +SGRGV
Sbjct: 1557 DMRDDGAGVPLEAVRRKAIKRGLLDPN--QDISDRDVLQFILQPGFSTAEKITQISGRGV 1614

Query: 573  GMDVVKTKISQLNGSINIFSAKGQGSKIVIKVPLTLAIMPTLMVMLGNQAFAFPLVNVNE 632
            GMDVV  ++ QL GS+ I S  G+G    I++P T+++   LMV   +  +A PL  +  
Sbjct: 1615 GMDVVHEEVRQLGGSMVIDSTPGEGVHFRIRLPFTVSVNRALMVQCADDQYAIPLNTIEG 1674

Query: 633  IFHL---DLSRTNVVDGQEVVIVRDKALPLFYLKRWLVQGQVHEEQHEGH-----VVILS 684
            +  +   +L+     D         +   LFYL   L    V   +  GH     V+++ 
Sbjct: 1675 LVRVLPHELAGHYQQDPPRYEYAGQR-YELFYLGDLL--HTVSRPKLLGHYQPVPVLLVQ 1731

Query: 685  VGTQRIGFVVDQLVGQEEVVIKPLGKMLQGTPGMSGATITGDGRIALILDV 735
               +R+   VD + G  E+V+K LG    G  G+SGATI GDGR+ LI+D+
Sbjct: 1732 CNERRVAIHVDAMAGTREIVVKGLGPQFAGVQGLSGATILGDGRVVLIIDL 1782



 Score = 58.5 bits (140), Expect = 3e-12
 Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 11/209 (5%)

Query: 4    GADEEILQDFLVEAGEILEQLSEQLVELESRPDDADLLNAIFRGFHTVKGGAGFLQLNEL 63
            GAD E+L  FL EA +IL+  S  L   ++ P +   +  + R  HT+KGGA  +++  +
Sbjct: 1178 GADPELLDIFLEEAADILDSSSAALSRWQAEPGNRQEVETLLRDLHTLKGGARMVEIAPI 1237

Query: 64   VECCHIAENVFDVLRKGERRVDAELMDVVLEALDTVNSMFGQVRERAEVTPATPALLAAL 123
             +  H  E +++ L  G      EL  ++    D +  M   V +   V  +   L+  +
Sbjct: 1238 GDLAHELEFLYEGLSAGLLAPSPELFALLQGCHDRLAQMIDAVADGLPV-GSVDKLIERI 1296

Query: 124  SRLAEPGAAEAVAAPVPAPVADVVAAAPAEAEEQHQDITDSEFEQLLDSLDAIKAQAAAD 183
              L  P         +PA  A+ V    A+  +           +LLD L  +  + +  
Sbjct: 1297 KTLVHPSDEPVTPVALPAGKAEAVVDPMADMVKIS--------AELLDDLVNLAGETSIF 1348

Query: 184  EQMQGETVSGAGDEITDAE--FESLLDQL 210
                 + V+ A   +T+ E   E + DQL
Sbjct: 1349 RGRIEQQVNDARIALTEVETTIERMRDQL 1377



 Score = 53.5 bits (127), Expect = 1e-10
 Identities = 81/301 (26%), Positives = 121/301 (40%), Gaps = 57/301 (18%)

Query: 6   DEEILQDFLVEAGEILEQLSEQLVELESRPDDADLL--NAIFRGFHTVKGGAGFLQLNEL 63
           D+E+ + FL E  E+LE L   L      P+ AD +    + R FHT+KG    ++   L
Sbjct: 617 DDELREVFLEETDEVLEVLHRNL------PNSADKIAQGEMRRAFHTLKGSGRMVRALVL 670

Query: 64  VECCHIAENVFDVLRKGERRVDAELMDVVLEALDTVNSMFGQVRERAEVTPATPALLA-- 121
            E     EN               L++ VLE   T+     QV +  E     P L+A  
Sbjct: 671 AELAWAVEN---------------LLNRVLERSVTLGPDVQQVLD--EAVALLPELIADF 713

Query: 122 ALSRLAEPGAAEAVAAPVPAPVADVVAAAPAEAEEQHQ----DITDSEFEQLLDSLDAIK 177
           A+    +    +A+AA   A    + +  P  A E H     +I  +E +  LDSL+   
Sbjct: 714 AIDDQRQRDEVDALAARAHA----LASGMPVPAAEPHDPMLLEIFRNEAQSHLDSLNHFL 769

Query: 178 AQAAADEQMQGETVSGAGDEITDAEFESLLDQLHGKGQFN-----AEVAAPPVAVSSEVV 232
            QAA    +Q          ++D E +  L  L G          AE+A P   ++ E  
Sbjct: 770 HQAAEHVPLQ----------VSD-ELQRALHTLKGSAYMAGVLPIAELARPLDHLTREYK 818

Query: 233 SDEI-TDAEFESLLDQLHGKGTFQAGALPAAQ---APAPAAPDNSAASDEISEHEFEALL 288
           +  +  D +   LL  L  +G FQ G         AP   A D    +  + +H+ EALL
Sbjct: 819 AHRLPLDLDEVELL--LEAEGLFQRGLRDLDSDPLAPIKGAEDLINRTQSLLDHQLEALL 876

Query: 289 D 289
           D
Sbjct: 877 D 877