Pairwise Alignments

Query, 285 a.a., flagellar motor protein from Pseudomonas putida KT2440

Subject, 295 a.a., flagellar motor protein MotD from Pseudomonas simiae WCS417

 Score =  444 bits (1142), Expect = e-129
 Identities = 217/275 (78%), Positives = 253/275 (92%), Gaps = 1/275 (0%)

Query: 2   RRRRHTEEHENHERWLVSYADFITLLFAFFVVMYSISSINEGKYKVISQALLGVFNDPER 61
           RRRR  EEH NHERWLVSYADFITLLFAFFVVMYSISSINEGKYKVISQAL+GVFND +R
Sbjct: 3   RRRREPEEHVNHERWLVSYADFITLLFAFFVVMYSISSINEGKYKVISQALIGVFNDADR 62

Query: 62  SMKPIPIGDEQPLSVRPAEPLVKDSEQTEAGLAATNVDPLKTISDDVRDAFGDLINSDQM 121
           S+K IPIG+E+P +V PA+PLV DS++T AG+  T+ DPLK+I+DD+  AFGDLI+S+QM
Sbjct: 63  SLKAIPIGEERPKTVTPAKPLVNDSDETAAGVGGTS-DPLKSIADDISAAFGDLISSNQM 121

Query: 122 TVRGNELWIEIELNSSLLFGSGDAMPSDKAFAIIEKVASILKPFANPVHVEGFTDNLPIR 181
           TVRGNELW+EIELNSSLLF S DA+PSD+AF II+KVA+ILKPF NP+HVEGFTDN PI 
Sbjct: 122 TVRGNELWVEIELNSSLLFASADALPSDQAFTIIDKVAAILKPFENPIHVEGFTDNFPIS 181

Query: 182 TAQYPTNWELSSARAASIVRLLAMEGVNPARMASVGYGEYQPVASNDTAEGRARNRRVVL 241
           TAQYPTNWELSSARA+SIVR+LAM+G+NP R+ASVGYGE+QPVA+N TAEGRA+NRRVVL
Sbjct: 182 TAQYPTNWELSSARASSIVRMLAMQGINPGRLASVGYGEFQPVANNATAEGRAKNRRVVL 241

Query: 242 VISRNLEVRRSLTGSGSANATPDAALRRAGTQSAP 276
           V+SRNL+VRRSLTG+G+ANATPDAAL+RAGTQ+AP
Sbjct: 242 VVSRNLDVRRSLTGTGTANATPDAALKRAGTQTAP 276