Pairwise Alignments

Query, 776 a.a., DNA ligase from Pseudomonas putida KT2440

Subject, 554 a.a., NAD-dependent DNA ligase LigB from Pseudomonas simiae WCS417

 Score =  147 bits (370), Expect = 2e-39
 Identities = 151/598 (25%), Positives = 260/598 (43%), Gaps = 79/598 (13%)

Query: 2   TAETRILELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQRV 61
           TA  ++  L  ++   +  Y+ L++  V D  YD+    L      H     P+SP +  
Sbjct: 25  TARAQVNTLTEQIRLWDDSYHRLNQSPVSDELYDQAHQRLT-----HWRRCFPESPPKPD 79

Query: 62  GGAALAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVEGLDQPGAVDYSCEPKLDGLAVS 121
              A ++   +RH +    L    +E  +         G       D   +PK+DG+AV+
Sbjct: 80  NPLA-SSRGTLRHPIAHTGLEKLLDEQAV---------GAWLSTRQDVWIQPKVDGVAVT 129

Query: 122 LLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGKGWPAVLEVRGEVYMSKAGFD 181
           L+YR G+L Q  +RGDG  G D SA+ R +  I  +L     P  L ++GE+Y       
Sbjct: 130 LVYRQGRLRQVISRGDGLMGHDWSASARRIPGIVQQLPE---PIDLVLQGELYWHLD--- 183

Query: 182 RLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCY----GVGQVSESIGDSH 237
             +  Q+  GG    N R+  AG + +L+     +  +    +    G G  +E      
Sbjct: 184 --DHVQSANGG---LNARSKVAGLMNRLELSDADAAGIGLFVWAWPEGPGSFTER----- 233

Query: 238 IGILEQLKAWGLPISRE----LKHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLA 293
              L  L  WG   SR     ++  A      AY+ +     + LP+  DGVV       
Sbjct: 234 ---LAALARWGFTDSRRYSQPIRDIAEATHWRAYWYN-----HPLPFASDGVVLHQAQRP 285

Query: 294 AQRELGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSN 353
             R   ++A EP WA+A K+PA + L  V +V F++GRTG +TP+  L+PV++    +S 
Sbjct: 286 PARR--WKASEPYWAVAWKYPAAKALALVRNVRFKIGRTGRITPMLELEPVQLDDRQISR 343

Query: 354 ATLHNMDEIARLGLRIGDTVIIRRAGDVIPQVMQVVLERRPQGARPVEVPSACPVCGSQV 413
            +  ++     L +R GD V I  AG VIP++ +V+L    + A   ++ +  P     +
Sbjct: 344 VSAGSLKRWQTLDIRPGDQVSISLAGQVIPRLDEVIL----RNAHRADLAAPDPRDFHAL 399

Query: 414 ERTRLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGEKSVEQLV 473
              +L                       C  QL   +      + + +  +G ++   L+
Sbjct: 400 SCWQLDP--------------------GCEEQLLARLTWLSGNQGLALPHIGRETWNVLI 439

Query: 474 DEGLIGSPADLYKLQFEQVVGLEGFAEVSTQKLLDAIEASKRPSLARFIYALGIPDVGEE 533
             GLI S  D   L   ++  +EGF + S  ++L+++ ++++ S A+++ ALG+P     
Sbjct: 440 QAGLIASFLDWLTLDVAELANIEGFGDSSRTRVLESLNSARQRSFAQWLKALGVPPAARN 499

Query: 534 TAKVLARSLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFFEDEHNQKVIQQLLDSGM 591
             +   ++L  +AR  QA       +  IG   A ++  FF D   Q +   L  +G+
Sbjct: 500 NLEGDWQTL--VARDTQA----WLAIDGIGPGRAAQLSAFFRDPQVQALADTLRVAGI 551