Pairwise Alignments

Query, 776 a.a., DNA ligase from Pseudomonas putida KT2440

Subject, 724 a.a., DNA ligase from Agrobacterium fabrum C58

 Score =  474 bits (1220), Expect = e-138
 Identities = 270/627 (43%), Positives = 373/627 (59%), Gaps = 47/627 (7%)

Query: 1   MTAETRILELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQR 60
           + A + +  L AEL +H+  Y+  D P + DA+YD L     A+EA  P LV  DSP+++
Sbjct: 14  LEASSELAFLAAELARHDALYHGKDAPEISDADYDALKRRNDAIEAAFPALVRADSPSKK 73

Query: 61  VGGAALAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVEGLDQ--PGAVDYSCEPKLDGL 118
           VG   L  F+ + H  PMLSL N F E DLR+F   V   L      ++ ++ EPK+DGL
Sbjct: 74  VGFTPLPTFAPIVHARPMLSLDNTFSEEDLRDFVSSVYRFLGHLPDDSIAFTAEPKIDGL 133

Query: 119 AVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGKGWPAVLEVRGEVYMSKA 178
           ++S+ Y + +L   ATRGDGTTGE+++AN+RT++ IP +L     P V+EVRGEVYM+K+
Sbjct: 134 SMSIRYENRKLKTAATRGDGTTGENVTANIRTIKEIPNELPADA-PDVVEVRGEVYMAKS 192

Query: 179 GFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSES-----I 233
            F  LNA     G +T+ NPRN A+GSLRQLD+ +TA R L F  Y +G+VS       I
Sbjct: 193 DFLALNAQMEADGKQTYVNPRNTASGSLRQLDANVTAKRKLRFFAYALGEVSNGGQPARI 252

Query: 234 GDSHIGILEQLKAWGLPISRELKHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLA 293
            D+  GI+E+ + WG P++  +K     ++ L +Y +IG  R  L Y+IDGVV+KV+ L 
Sbjct: 253 ADTQYGIVEKFREWGFPVNPLMKRFTSAQQLLEHYNEIGVARPDLDYDIDGVVYKVDRLD 312

Query: 294 AQRELGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSN 353
            Q  LGFR+R PRWA AHKFPA +  T V ++E QVGRTGA+TPVARL P+ V GV V+N
Sbjct: 313 LQERLGFRSRSPRWATAHKFPAEQAFTTVENIEIQVGRTGALTPVARLTPITVGGVVVTN 372

Query: 354 ATLHNMDEIARLG------------LRIGDTVIIRRAGDVIPQVMQVVLERRPQGARPVE 401
           ATLHN D I  +G            +RIGDTVI++RAGDVIPQV+ V+LE+R  GA    
Sbjct: 373 ATLHNADYIEGIGNSGERIRPEDHDIRIGDTVIVQRAGDVIPQVLDVLLEKRAAGAAKYV 432

Query: 402 VPSACPVCGSQVERTRLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDI 461
            P  CPVCGS   R R       ++T    +V RC G   C AQ  + + H+VSR A DI
Sbjct: 433 FPEKCPVCGSHAVRER------NEKTGKLDSVTRCTGGFVCRAQAVEHLKHFVSRNAFDI 486

Query: 462 DGLGEKSVEQLVDEG----LIGSPADLYKLQFEQ-------VVGLEGFAEVSTQKLLDAI 510
           +GLG K ++   +       I +  D++ L+  Q       +  ++GF +VS +KL DAI
Sbjct: 487 EGLGTKQIDFFFESDDPALSIKTAPDIFTLKARQEASHLTKLENIDGFGKVSVKKLFDAI 546

Query: 511 EASKRPSLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQV----------LTYLP 560
           +A +   L R I+ALGI  VGE TAK+LARS G+    ++A+             L  + 
Sbjct: 547 DARRAIDLHRLIFALGIRHVGETTAKLLARSYGTYEHFEKAMKAAADPASDAWAELNSID 606

Query: 561 DIGLEVAYEIHNFFEDEHNQKVIQQLL 587
            IG  VA  I  F+++  N  VI +L+
Sbjct: 607 GIGEVVARAIIEFYKEPRNLDVIDRLI 633



 Score =  105 bits (262), Expect = 9e-27
 Identities = 74/175 (42%), Positives = 100/175 (57%), Gaps = 26/175 (14%)

Query: 612 MIAKLDIASVGPTGAEKLVAR----LDSLDKIIAADGIDLRQALAAKQ---------ADA 658
           +I  L I  VG T A KL+AR     +  +K + A       A A            A A
Sbjct: 557 LIFALGIRHVGETTA-KLLARSYGTYEHFEKAMKAAADPASDAWAELNSIDGIGEVVARA 615

Query: 659 VREFFKDEAN----QKLARDIEAQLLAFGMHWSSEKKVAEGLPLAGQTWVLTGTLERMSR 714
           + EF+K+  N     +L R+++ +         +EK   EG P+AG+T V TG+LE+ +R
Sbjct: 616 IIEFYKEPRNLDVIDRLIRELQPK--------EAEKPSTEGSPVAGKTVVFTGSLEKFTR 667

Query: 715 DIAKDKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAKAAELGVKVLDEDAFVTFL 769
           D AK + ESLGAKVAGSVS KT  +VAGPGAGSKLAKA ELGV+ +DED ++  +
Sbjct: 668 DEAKARAESLGAKVAGSVSKKTDILVAGPGAGSKLAKATELGVQTMDEDEWLALI 722