Pairwise Alignments

Query, 325 a.a., cytochrome c oxidase subunit, cbb3-type from Pseudomonas putida KT2440

Subject, 392 a.a., Cytochrome c oxidase polypeptide II (EC 1.9.3.1) from Variovorax sp. SCN45

 Score = 45.8 bits (107), Expect = 2e-09
 Identities = 33/111 (29%), Positives = 45/111 (40%), Gaps = 6/111 (5%)

Query: 197 HGVMPAWAEVIGDQG----VADVAAFVVSKLDGRTLPEGAKADVENGQKIFAANCVACHG 252
           H  MP   +V+        VAD      +KLD  T        +  G+K++AANC ACH 
Sbjct: 253 HAFMPIQVKVVSAADYTAWVADQRKIAAAKLDDPTKVWTLPDMLVRGEKVYAANCAACHQ 312

Query: 253 PEGKGTPAMGAPNLTHPQAFIYGSSFAQLQQTIRYGRQGQMPAQEQLQGND 303
             GKG   + A  L      +      QL   +     G MP+ +QL   D
Sbjct: 313 ANGKGAGPIKA--LDGDPKVLDADHSVQLHVLLNGQNNGAMPSWKQLSDTD 361



 Score = 41.6 bits (96), Expect = 3e-08
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 15/107 (14%)

Query: 130 KFAAMPIEEVAKD---PQALKMGARLFASNCSVCHGSDAKGA------FGFPNLTDNDWR 180
           K AA  +++  K    P  L  G +++A+NC+ CH ++ KGA       G P + D D  
Sbjct: 277 KIAAAKLDDPTKVWTLPDMLVRGEKVYAANCAACHQANGKGAGPIKALDGDPKVLDAD-- 334

Query: 181 WGGEPETIKTTIMAGRHGVMPAWAEVIGDQGVADVAAFVVSKLDGRT 227
                  +   +    +G MP+W + + D  +A VA +  +    +T
Sbjct: 335 ---HSVQLHVLLNGQNNGAMPSWKQ-LSDTDLAAVATYTKNSWSNKT 377