Pairwise Alignments

Query, 325 a.a., cytochrome c oxidase subunit, cbb3-type from Pseudomonas putida KT2440

Subject, 287 a.a., cytochrome-c oxidase, FixP chain from Agrobacterium fabrum C58

 Score =  169 bits (429), Expect = 6e-47
 Identities = 104/291 (35%), Positives = 142/291 (48%), Gaps = 33/291 (11%)

Query: 38  ETVGHAFDGIEEYDNPLPQWWFWLFVGTIVFALGYLVLYPGLGNWKGVLPGYSYLDNDKQ 97
           ET GH +DGI E +NP+P+WW W F  TI++A+GY + YP      G             
Sbjct: 13  ETTGHEWDGIRELNNPMPRWWVWTFYFTILWAIGYTIAYPAWPLINGA------------ 60

Query: 98  TEFSNGQPGWTGVHEWEKEMAKADARFGPIFAKFAAMPIEEVAKDPQ----ALKMGARLF 153
              + G  GW+   E   E+A A         K A   + E+  DP     AL  GA  F
Sbjct: 61  ---TQGLLGWSSRGEIAAEIADAKQSQSVYVDKIANSSLAEIQADPTLMQFALSGGAAAF 117

Query: 154 ASNCSVCHGSDAKGAFGFPNLTDNDWRWGGEPETIKTTIMAG---------RHGVMPAWA 204
             NC  CHGS A+G  G+PNL D+DW WGG  + I TT+  G         R   MPA+ 
Sbjct: 118 KVNCIQCHGSGAEGGQGYPNLNDDDWMWGGSVDDIYTTVKHGIRFADDADTRASEMPAFG 177

Query: 205 EVIGDQGVADVAAFVVSKLDGRTLPEGAKADVENGQKIFAANCVACHGPEGKGTPAMGAP 264
           +++    +  VAA+VVS     + P    A VE G+++FA NC +CHG + KG    GAP
Sbjct: 178 DILKSDEIRAVAAYVVSLTGTPSNP----ALVEPGKQLFADNCASCHGEDAKGNREFGAP 233

Query: 265 NLTHPQAFIYGSSFAQLQQTIRYGRQGQMPAQEQLQGNDKVHLLAAYVYSL 315
           NL     ++       +   IR  + G MPA  +  G+  V  LA +V+SL
Sbjct: 234 NLA-DAIWLKAHGEEGIVAQIRSPKHGVMPAWGERLGDTTVKQLAIFVHSL 283



 Score = 46.6 bits (109), Expect = 7e-10
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 12/90 (13%)

Query: 236 VENGQKIFAANCVACHGPEGKGTPAMGAPNLTHPQAFIYGSSFAQLQQTIRYG------- 288
           +  G   F  NC+ CHG   +G    G PNL     +++G S   +  T+++G       
Sbjct: 110 LSGGAAAFKVNCIQCHGSGAEG--GQGYPNLNDDD-WMWGGSVDDIYTTVKHGIRFADDA 166

Query: 289 --RQGQMPAQEQLQGNDKVHLLAAYVYSLS 316
             R  +MPA   +  +D++  +AAYV SL+
Sbjct: 167 DTRASEMPAFGDILKSDEIRAVAAYVVSLT 196